Literature DB >> 18957198

Nature, nurture, or chance: stochastic gene expression and its consequences.

Arjun Raj1, Alexander van Oudenaarden.   

Abstract

Gene expression is a fundamentally stochastic process, with randomness in transcription and translation leading to cell-to-cell variations in mRNA and protein levels. This variation appears in organisms ranging from microbes to metazoans, and its characteristics depend both on the biophysical parameters governing gene expression and on gene network structure. Stochastic gene expression has important consequences for cellular function, being beneficial in some contexts and harmful in others. These situations include the stress response, metabolism, development, the cell cycle, circadian rhythms, and aging.

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Year:  2008        PMID: 18957198      PMCID: PMC3118044          DOI: 10.1016/j.cell.2008.09.050

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  104 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Stochastic patterns in globin gene expression are established prior to transcriptional activation and are clonally inherited.

Authors:  Mariken de Krom; Mariette van de Corput; Marieke von Lindern; Frank Grosveld; John Strouboulis
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

4.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

5.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

6.  Contributions of low molecule number and chromosomal positioning to stochastic gene expression.

Authors:  Attila Becskei; Benjamin B Kaufmann; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2005-08-07       Impact factor: 38.330

7.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

8.  Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium.

Authors:  R Vassar; J Ngai; R Axel
Journal:  Cell       Date:  1993-07-30       Impact factor: 41.582

9.  Single-cell observations reveal intermediate transcriptional silencing states.

Authors:  Eugenia Y Xu; Karl A Zawadzki; James R Broach
Journal:  Mol Cell       Date:  2006-07-21       Impact factor: 17.970

10.  Real-time analysis of the transcriptional regulation of HIV and hCMV promoters in single mammalian cells.

Authors:  M R White; M Masuko; L Amet; G Elliott; M Braddock; A J Kingsman; S M Kingsman
Journal:  J Cell Sci       Date:  1995-02       Impact factor: 5.285

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  967 in total

Review 1.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

2.  Identifying dynamical bottlenecks of stochastic transitions in biochemical networks.

Authors:  Christopher C Govern; Ming Yang; Arup K Chakraborty
Journal:  Phys Rev Lett       Date:  2012-01-30       Impact factor: 9.161

3.  Single cell transcriptional profiling of adult mouse cardiomyocytes.

Authors:  James M Flynn; Luis F Santana; Simon Melov
Journal:  J Vis Exp       Date:  2011-12-28       Impact factor: 1.355

4.  A common repressor pool results in indeterminacy of extrinsic noise.

Authors:  Michail Stamatakis; Rhys M Adams; Gábor Balázsi
Journal:  Chaos       Date:  2011-12       Impact factor: 3.642

Review 5.  Evolution of microRNA diversity and regulation in animals.

Authors:  Eugene Berezikov
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

6.  Pol II caught speeding by single gene imaging.

Authors:  Danielle Cannon; Jonathan R Chubb
Journal:  EMBO Rep       Date:  2011-12-01       Impact factor: 8.807

7.  Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors.

Authors:  Sydney M Shaffer; Benjamin L Emert; Raúl A Reyes Hueros; Christopher Cote; Guillaume Harmange; Dylan L Schaff; Ann E Sizemore; Rohit Gupte; Eduardo Torre; Abhyudai Singh; Danielle S Bassett; Arjun Raj
Journal:  Cell       Date:  2020-07-30       Impact factor: 41.582

8.  Conceptual and data-based investigation of genetic influences and brain asymmetry: a twin study of multiple structural phenotypes.

Authors:  Lisa T Eyler; Eero Vuoksimaa; Matthew S Panizzon; Christine Fennema-Notestine; Michael C Neale; Chi-Hua Chen; Amy Jak; Carol E Franz; Michael J Lyons; Wesley K Thompson; Kelly M Spoon; Bruce Fischl; Anders M Dale; William S Kremen
Journal:  J Cogn Neurosci       Date:  2013-11-27       Impact factor: 3.225

Review 9.  On the Molecular Mechanisms Regulating Animal Cell Size Homeostasis.

Authors:  Evgeny Zatulovskiy; Jan M Skotheim
Journal:  Trends Genet       Date:  2020-02-20       Impact factor: 11.639

10.  Anterior-posterior regionalized gene expression in the Ciona notochord.

Authors:  Wendy Reeves; Rachel Thayer; Michael Veeman
Journal:  Dev Dyn       Date:  2013-12-27       Impact factor: 3.780

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