Literature DB >> 28732673

Expanding the horizons for structural analysis of fully protonated protein assemblies by NMR spectroscopy at MAS frequencies above 100 kHz.

Jochem Struppe1, Caitlin M Quinn2, Manman Lu2, Mingzhang Wang2, Guangjin Hou2, Xingyu Lu2, Jodi Kraus2, Loren B Andreas3, Jan Stanek3, Daniela Lalli3, Anne Lesage3, Guido Pintacuda3, Werner Maas4, Angela M Gronenborn5, Tatyana Polenova6.   

Abstract

The recent breakthroughs in NMR probe technologies resulted in the development of MAS NMR probes with rotation frequencies exceeding 100 kHz. Herein, we explore dramatic increases in sensitivity and resolution observed at MAS frequencies of 110-111 kHz in a novel 0.7 mm HCND probe that enable structural analysis of fully protonated biological systems. Proton- detected 2D and 3D correlation spectroscopy under such conditions requires only 0.1-0.5 mg of sample and a fraction of time compared to conventional 13C-detected experiments. We discuss the performance of several proton- and heteronuclear- (13C-,15N-) based correlation experiments in terms of sensitivity and resolution, using a model microcrystalline fMLF tripeptide. We demonstrate the applications of ultrafast MAS to a large, fully protonated protein assembly of the 231-residue HIV-1 CA capsid protein. Resonance assignments of protons and heteronuclei, as well as 1H-15N dipolar and 1HN CSA tensors are readily obtained from the high sensitivity and resolution proton-detected 3D experiments. The approach demonstrated here is expected to enable the determination of atomic-resolution structures of large protein assemblies, inaccessible by current methodologies.
Copyright © 2017. Published by Elsevier Inc.

Entities:  

Keywords:  HIV-1 capsid protein; MAS NMR; Protein assemblies; Proton-detected MAS NMR correlations

Mesh:

Substances:

Year:  2017        PMID: 28732673      PMCID: PMC5824719          DOI: 10.1016/j.ssnmr.2017.07.001

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  43 in total

1.  Sensitive high resolution inverse detection NMR spectroscopy of proteins in the solid state.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-12-24       Impact factor: 15.419

2.  Low-power XiX decoupling in MAS NMR experiments.

Authors:  Matthias Ernst; Ago Samoson; Beat H Meier
Journal:  J Magn Reson       Date:  2003-08       Impact factor: 2.229

3.  The stoichiometry of Gag protein in HIV-1.

Authors:  John A G Briggs; Martha N Simon; Ingolf Gross; Hans-Georg Kräusslich; Stephen D Fuller; Volker M Vogt; Marc C Johnson
Journal:  Nat Struct Mol Biol       Date:  2004-06-20       Impact factor: 15.369

4.  Ultrahigh resolution in proton solid-state NMR spectroscopy at high levels of deuteration.

Authors:  Veniamin Chevelkov; Kristina Rehbein; Anne Diehl; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-02       Impact factor: 15.336

5.  Symmetry in the design of NMR multiple-pulse sequences.

Authors:  Malcolm H Levitt
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

6.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

7.  De novo 3D structure determination from sub-milligram protein samples by solid-state 100 kHz MAS NMR spectroscopy.

Authors:  Vipin Agarwal; Susanne Penzel; Kathrin Szekely; Riccardo Cadalbert; Emilie Testori; Andres Oss; Jaan Past; Ago Samoson; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-15       Impact factor: 15.336

8.  Solid-state NMR studies of HIV-1 capsid protein assemblies.

Authors:  Yun Han; Jinwoo Ahn; Jason Concel; In-Ja L Byeon; Angela M Gronenborn; Jun Yang; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

9.  Site-specific structural variations accompanying tubular assembly of the HIV-1 capsid protein.

Authors:  Marvin J Bayro; Bo Chen; Wai-Ming Yau; Robert Tycko
Journal:  J Mol Biol       Date:  2013-12-24       Impact factor: 5.469

10.  Dynamic allostery governs cyclophilin A-HIV capsid interplay.

Authors:  Manman Lu; Guangjin Hou; Huilan Zhang; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Juan R Perilla; Christopher J Langmead; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; Christopher Aiken; Peijun Zhang; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

View more
  28 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

Review 2.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

3.  Detection of side-chain proton resonances of fully protonated biosolids in nano-litre volumes by magic angle spinning solid-state NMR.

Authors:  James Tolchard; Manoj Kumar Pandey; Mélanie Berbon; Abdelmajid Noubhani; Sven J Saupe; Yusuke Nishiyama; Birgit Habenstein; Antoine Loquet
Journal:  J Biomol NMR       Date:  2018-03-03       Impact factor: 2.835

4.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

5.  19F Magic Angle Spinning NMR Spectroscopy and Density Functional Theory Calculations of Fluorosubstituted Tryptophans: Integrating Experiment and Theory for Accurate Determination of Chemical Shift Tensors.

Authors:  Manman Lu; Sucharita Sarkar; Mingzhang Wang; Jodi Kraus; Matthew Fritz; Caitlin M Quinn; Shi Bai; Sean T Holmes; Cecil Dybowski; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2018-05-30       Impact factor: 2.991

Review 6.  Structural biology of human GPCR drugs and endogenous ligands - insights from NMR spectroscopy.

Authors:  Guillaume Ferré; Matthew T Eddy
Journal:  Methods       Date:  2020-09-08       Impact factor: 3.608

7.  Multi-receiver solid-state NMR using polarization optimized experiments (POE) at ultrafast magic angle spinning.

Authors:  T Gopinath; Daniel K Weber; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2020-04-24       Impact factor: 2.835

8.  Ultrafast 1H MAS NMR Crystallography for Natural Abundance Pharmaceutical Compounds.

Authors:  Jochem Struppe; Caitlin M Quinn; Sucharita Sarkar; Angela M Gronenborn; Tatyana Polenova
Journal:  Mol Pharm       Date:  2020-01-13       Impact factor: 4.939

9.  Direct amide 15N to 13C transfers for solid-state assignment experiments in deuterated proteins.

Authors:  Alons Lends; Francesco Ravotti; Giorgia Zandomeneghi; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2018-09-11       Impact factor: 2.835

10.  Biomolecular solid-state NMR spectroscopy at 1200 MHz: the gain in resolution.

Authors:  Morgane Callon; Alexander A Malär; Sara Pfister; Václav Římal; Marco E Weber; Thomas Wiegand; Johannes Zehnder; Matías Chávez; Riccardo Cadalbert; Rajdeep Deb; Alexander Däpp; Marie-Laure Fogeron; Andreas Hunkeler; Lauriane Lecoq; Anahit Torosyan; Dawid Zyla; Rudolf Glockshuber; Stefanie Jonas; Michael Nassal; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2021-06-25       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.