Literature DB >> 20092249

Solid-state NMR studies of HIV-1 capsid protein assemblies.

Yun Han1, Jinwoo Ahn, Jason Concel, In-Ja L Byeon, Angela M Gronenborn, Jun Yang, Tatyana Polenova.   

Abstract

In mature HIV-1 virions, the 26.6 kDa CA protein is assembled into a characteristic cone-shaped core (capsid) that encloses the RNA viral genome. The assembled capsid structure is best described by a fullerene cone model that is made up from a hexameric lattice containing a variable number of CA pentamers, thus allowing for closure of tubular or conical structures. In this paper, we present a solid-state NMR analysis of the wild-type HIV-1 CA protein, prepared as conical and spherical assemblies that are stable and are not affected by magic angle spinning of the samples at frequencies between 10 and 25 kHz. Multidimensional homo- and heteronuclear correlation spectra of CA assemblies of uniformly (13)C,(15)N-labeled CA exhibit narrow lines, indicative of the conformational homogeneity of the protein in these assemblies. For the conical assemblies, partial residue-specific resonance assignments were obtained. Analysis of the NMR spectra recorded for the conical and spherical assemblies indicates that the CA protein structure is not significantly different in the different morphologies. The present results demonstrate that the assemblies of CA protein are amenable to detailed structural analysis by solid-state NMR spectroscopy.

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Year:  2010        PMID: 20092249      PMCID: PMC2829833          DOI: 10.1021/ja908687k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  66 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

Authors:  Dabeiba Marulanda; Maria Luisa Tasayco; Ann McDermott; Marcela Cataldi; Vilma Arriaran; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

3.  High-resolution solid-state NMR spectroscopy of the prion protein HET-s in its amyloid conformation.

Authors:  Ansgar B Siemer; Christiane Ritter; Matthias Ernst; Roland Riek; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-15       Impact factor: 15.336

Review 4.  Oligomeric structure, dynamics, and orientation of membrane proteins from solid-state NMR.

Authors:  Mei Hong
Journal:  Structure       Date:  2006-12       Impact factor: 5.006

5.  Partial site-specific assignment of a uniformly (13)C, (15)N enriched membrane protein, light-harvesting complex 1 (LH1), by solid state NMR.

Authors:  Lei Huang; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2008-01-26

6.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

9.  Solid-state NMR study and assignments of the KcsA potassium ion channel of S. lividans.

Authors:  Krisztina Varga; Lin Tian; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2007-09-14

10.  Structure of full-length HIV-1 CA: a model for the mature capsid lattice.

Authors:  Barbie K Ganser-Pornillos; Anchi Cheng; Mark Yeager
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

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  57 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

3.  1H, 15N, and 13C resonance assignments for a monomeric mutant of the HIV-1 capsid protein.

Authors:  Ronald Shin; Ywh-Min Tzou; Hing C Wong; N Rama Krishna
Journal:  Biomol NMR Assign       Date:  2011-09-20       Impact factor: 0.746

4.  Hydrogen/deuterium exchange analysis of HIV-1 capsid assembly and maturation.

Authors:  Eric B Monroe; Sebyung Kang; Sampson K Kyere; Rui Li; Peter E Prevelige
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

5.  Inhibiting early-stage events in HIV-1 replication by small-molecule targeting of the HIV-1 capsid.

Authors:  Sandhya Kortagere; Navid Madani; Marie K Mankowski; Arne Schön; Isaac Zentner; Gokul Swaminathan; Amy Princiotto; Kevin Anthony; Apara Oza; Luz-Jeannette Sierra; Shendra R Passic; Xiaozhao Wang; David M Jones; Eric Stavale; Fred C Krebs; Julio Martín-García; Ernesto Freire; Roger G Ptak; Joseph Sodroski; Simon Cocklin; Amos B Smith
Journal:  J Virol       Date:  2012-05-30       Impact factor: 5.103

6.  Magic angle spinning NMR reveals sequence-dependent structural plasticity, dynamics, and the spacer peptide 1 conformation in HIV-1 capsid protein assemblies.

Authors:  Yun Han; Guangjin Hou; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Andrew S Lipton; Sarah Burton; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; David Rice; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2013-11-13       Impact factor: 15.419

7.  Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

8.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

Review 9.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

10.  Resonance Assignments and Secondary Structure Analysis of Dynein Light Chain 8 by Magic Angle Spinning NMR Spectroscopy.

Authors:  Shangjin Sun; Andrew H Butterworth; Sivakumar Paramasivam; Si Yan; Christine M Lightcap; John C Williams; Tatyana Polenova
Journal:  Can J Chem       Date:  2011-08-04       Impact factor: 1.118

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