Literature DB >> 29756776

19F Magic Angle Spinning NMR Spectroscopy and Density Functional Theory Calculations of Fluorosubstituted Tryptophans: Integrating Experiment and Theory for Accurate Determination of Chemical Shift Tensors.

Manman Lu1,2, Sucharita Sarkar1,2, Mingzhang Wang1,2, Jodi Kraus1, Matthew Fritz1, Caitlin M Quinn1, Shi Bai1, Sean T Holmes1, Cecil Dybowski1, Glenn P A Yap1, Jochem Struppe3, Ivan V Sergeyev3, Werner Maas3, Angela M Gronenborn2,4, Tatyana Polenova1,2.   

Abstract

The 19F chemical shift is a sensitive NMR probe of structure and electronic environment in organic and biological molecules. In this report, we examine chemical shift parameters of 4F-, 5F-, 6F-, and 7F-substituted crystalline tryptophan by magic angle spinning (MAS) solid-state NMR spectroscopy and density functional theory. Significant narrowing of the 19F lines was observed under fast MAS conditions, at spinning frequencies above 50 kHz. The parameters characterizing the 19F chemical shift tensor are sensitive to the position of the fluorine in the aromatic ring and, to a lesser extent, the chirality of the molecule. Accurate calculations of 19F magnetic shielding tensors require the PBE0 functional with a 50% admixture of a Hartree-Fock exchange term, as well as taking account of the local crystal symmetry. The methodology developed will be beneficial for 19F-based MAS NMR structural analysis of proteins and protein assemblies.

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Year:  2018        PMID: 29756776      PMCID: PMC6203958          DOI: 10.1021/acs.jpcb.8b00377

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  34 in total

1.  De novo determination of the crystal structure of a large drug molecule by crystal structure prediction-based powder NMR crystallography.

Authors:  Maria Baias; Jean-Nicolas Dumez; Per H Svensson; Staffan Schantz; Graeme M Day; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2013-11-11       Impact factor: 15.419

2.  Amino acid composition and protein dimension.

Authors:  Oliviero Carugo
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

3.  Single-crystal investigation of L-tryptophan with Z' = 16.

Authors:  Carl Henrik Görbitz; Karl Wilhelm Törnroos; Graeme M Day
Journal:  Acta Crystallogr B       Date:  2012-09-13

4.  Prediction of (19)F NMR Chemical Shifts in Labeled Proteins: Computational Protocol and Case Study.

Authors:  William C Isley; Andrew K Urick; William C K Pomerantz; Christopher J Cramer
Journal:  Mol Pharm       Date:  2016-06-02       Impact factor: 4.939

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Using O2 to probe membrane immersion depth by 19F NMR.

Authors:  R S Prosser; P A Luchette; P W Westerman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

7.  Magic-angle-spinning NMR techniques for measuring long-range distances in biological macromolecules.

Authors:  Mei Hong; Klaus Schmidt-Rohr
Journal:  Acc Chem Res       Date:  2013-02-07       Impact factor: 22.384

8.  19F-n.m.r. studies of 3',5'-difluoromethotrexate binding to Lactobacillus casei dihydrofolate reductase. Molecular motion and coenzyme-induced conformational changes.

Authors:  G M Clore; A M Gronenborn; B Birdsall; J Feeney; G C Roberts
Journal:  Biochem J       Date:  1984-02-01       Impact factor: 3.857

9.  Solid state 19F NMR parameters of fluorine-labeled amino acids. Part I: aromatic substituents.

Authors:  Ulrich H N Dürr; Stephan L Grage; Raiker Witter; Anne S Ulrich
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

10.  Side-chain conformation of the M2 transmembrane peptide proton channel of influenza a virus from 19F solid-state NMR.

Authors:  Wenbin Luo; Rajeswari Mani; Mei Hong
Journal:  J Phys Chem B       Date:  2007-08-17       Impact factor: 2.991

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  9 in total

1.  Determination of Long-Range Distances by Fast Magic-Angle-Spinning Radiofrequency-Driven 19F-19F Dipolar Recoupling NMR.

Authors:  Matthias Roos; Venkata S Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2018-09-27       Impact factor: 2.991

2.  Measurement of Accurate Interfluorine Distances in Crystalline Organic Solids: A High-Frequency Magic Angle Spinning NMR Approach.

Authors:  Matthew Fritz; Jodi Kraus; Caitlin M Quinn; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-12-10       Impact factor: 2.991

3.  19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Authors:  Manman Lu; Mingzhang Wang; Ivan V Sergeyev; Caitlin M Quinn; Jochem Struppe; Melanie Rosay; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2019-04-01       Impact factor: 15.419

4.  19F NMR relaxation studies of fluorosubstituted tryptophans.

Authors:  Manman Lu; Rieko Ishima; Tatyana Polenova; Angela M Gronenborn
Journal:  J Biomol NMR       Date:  2019-08-21       Impact factor: 2.835

5.  Development and Validation of Fluorinated, Aromatic Amino Acid Parameters for Use with the AMBER ff15ipq Protein Force Field.

Authors:  Darian T Yang; Angela M Gronenborn; Lillian T Chong
Journal:  J Phys Chem A       Date:  2022-03-30       Impact factor: 2.944

Review 6.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

7.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

8.  Fast Magic-Angle Spinning 19 F NMR Spectroscopy of HIV-1 Capsid Protein Assemblies.

Authors:  Mingzhang Wang; Manman Lu; Matthew P Fritz; Caitlin M Quinn; In-Ja L Byeon; Chang-Hyeock Byeon; Jochem Struppe; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-19       Impact factor: 15.336

9.  Predicting 19 F NMR Chemical Shifts: A Combined Computational and Experimental Study of a Trypanosomal Oxidoreductase-Inhibitor Complex.

Authors:  Johannes C B Dietschreit; Annika Wagner; T Anh Le; Philipp Klein; Hermann Schindelin; Till Opatz; Bernd Engels; Ute A Hellmich; Christian Ochsenfeld
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-25       Impact factor: 15.336

  9 in total

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