Literature DB >> 28732598

High-Throughput Imaging for the Discovery of Cellular Mechanisms of Disease.

Gianluca Pegoraro1, Tom Misteli2.   

Abstract

High-throughput imaging (HTI) is a powerful tool in the discovery of cellular disease mechanisms. While traditional approaches to identify disease pathways often rely on knowledge of the causative genetic defect, HTI-based screens offer an unbiased discovery approach based on any morphological or functional defects of disease cells or tissues. In this review, we provide an overview of the use of HTI for the study of human disease mechanisms. We discuss key technical aspects of HTI and highlight representative examples of its practical applications for the discovery of molecular mechanisms of disease, focusing on infectious diseases and host-pathogen interactions, cancer, and rare genetic diseases. We also present some of the current challenges and possible solutions offered by novel cell culture systems and genome engineering approaches. Published by Elsevier Ltd.

Entities:  

Keywords:  RNAi screening; automation; chemical screening; fluorescence microscopy; high-content imaging; high-throughput imaging; phenotypic profiling

Mesh:

Year:  2017        PMID: 28732598      PMCID: PMC5562530          DOI: 10.1016/j.tig.2017.06.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  85 in total

1.  Lamin a truncation in Hutchinson-Gilford progeria.

Authors:  Annachiara De Sandre-Giovannoli; Rafaëlle Bernard; Pierre Cau; Claire Navarro; Jeanne Amiel; Irène Boccaccio; Stanislas Lyonnet; Colin L Stewart; Arnold Munnich; Martine Le Merrer; Nicolas Lévy
Journal:  Science       Date:  2003-04-17       Impact factor: 47.728

2.  Epigenetic siRNA and Chemical Screens Identify SETD8 Inhibition as a Therapeutic Strategy for p53 Activation in High-Risk Neuroblastoma.

Authors:  Veronica Veschi; Zhihui Liu; Ty C Voss; Laurent Ozbun; Berkley Gryder; Chunhua Yan; Ying Hu; Anqi Ma; Jian Jin; Sharlyn J Mazur; Norris Lam; Barbara K Souza; Giuseppe Giannini; Gordon L Hager; Cheryl H Arrowsmith; Javed Khan; Ettore Appella; Carol J Thiele
Journal:  Cancer Cell       Date:  2017-01-09       Impact factor: 31.743

3.  Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Authors:  Beate Neumann; Thomas Walter; Jean-Karim Hériché; Jutta Bulkescher; Holger Erfle; Christian Conrad; Phill Rogers; Ina Poser; Michael Held; Urban Liebel; Cihan Cetin; Frank Sieckmann; Gregoire Pau; Rolf Kabbe; Annelie Wünsche; Venkata Satagopam; Michael H A Schmitz; Catherine Chapuis; Daniel W Gerlich; Reinhard Schneider; Roland Eils; Wolfgang Huber; Jan-Michael Peters; Anthony A Hyman; Richard Durbin; Rainer Pepperkok; Jan Ellenberg
Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

Review 4.  High-content screening in infectious diseases.

Authors:  Priscille Brodin; Thierry Christophe
Journal:  Curr Opin Chem Biol       Date:  2011-06-20       Impact factor: 8.822

5.  Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9.

Authors:  Dominik Paquet; Dylan Kwart; Antonia Chen; Andrew Sproul; Samson Jacob; Shaun Teo; Kimberly Moore Olsen; Andrew Gregg; Scott Noggle; Marc Tessier-Lavigne
Journal:  Nature       Date:  2016-04-27       Impact factor: 49.962

6.  Spatial dynamics of chromosome translocations in living cells.

Authors:  Vassilis Roukos; Ty C Voss; Christine K Schmidt; Seungtaek Lee; Darawalee Wangsa; Tom Misteli
Journal:  Science       Date:  2013-08-09       Impact factor: 47.728

7.  A high-content imaging-based screening pipeline for the systematic identification of anti-progeroid compounds.

Authors:  Nard Kubben; Kyle R Brimacombe; Megan Donegan; Zhuyin Li; Tom Misteli
Journal:  Methods       Date:  2015-09-01       Impact factor: 3.608

8.  High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy.

Authors:  Samuel A Hasson; Lesley A Kane; Koji Yamano; Chiu-Hui Huang; Danielle A Sliter; Eugen Buehler; Chunxin Wang; Sabrina M Heman-Ackah; Tara Hessa; Rajarshi Guha; Scott E Martin; Richard J Youle
Journal:  Nature       Date:  2013-11-24       Impact factor: 49.962

9.  Targeting mutant RAS in patient-derived colorectal cancer organoids by combinatorial drug screening.

Authors:  Carla S Verissimo; René M Overmeer; Bas Ponsioen; Jarno Drost; Sander Mertens; Ingrid Verlaan-Klink; Bastiaan van Gerwen; Marieke van der Ven; Marc van de Wetering; David A Egan; René Bernards; Hans Clevers; Johannes L Bos; Hugo J Snippert
Journal:  Elife       Date:  2016-11-15       Impact factor: 8.140

10.  Seamless gene correction of β-thalassemia mutations in patient-specific iPSCs using CRISPR/Cas9 and piggyBac.

Authors:  Fei Xie; Lin Ye; Judy C Chang; Ashley I Beyer; Jiaming Wang; Marcus O Muench; Yuet Wai Kan
Journal:  Genome Res       Date:  2014-08-05       Impact factor: 9.043

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  28 in total

Review 1.  Blank spots on the map: some current questions on nuclear organization and genome architecture.

Authors:  Carmen Adriaens; Leonid A Serebryannyy; Marina Feric; Andria Schibler; Karen J Meaburn; Nard Kubben; Pawel Trzaskoma; Sigal Shachar; Sandra Vidak; Elizabeth H Finn; Varun Sood; Gianluca Pegoraro; Tom Misteli
Journal:  Histochem Cell Biol       Date:  2018-09-20       Impact factor: 4.304

Review 2.  High-speed laser-scanning biological microscopy using FACED.

Authors:  Queenie T K Lai; Gwinky G K Yip; Jianglai Wu; Justin S J Wong; Michelle C K Lo; Kelvin C M Lee; Tony T H D Le; Hayden K H So; Na Ji; Kevin K Tsia
Journal:  Nat Protoc       Date:  2021-08-02       Impact factor: 13.491

3.  DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae.

Authors:  Ying Zhang; Yubin Xie; Wenzhong Liu; Wankun Deng; Di Peng; Chenwei Wang; Haodong Xu; Chen Ruan; Yongjie Deng; Yaping Guo; Chenjun Lu; Cong Yi; Jian Ren; Yu Xue
Journal:  Autophagy       Date:  2019-06-20       Impact factor: 16.016

4.  SpotLearn: Convolutional Neural Network for Detection of Fluorescence In Situ Hybridization (FISH) Signals in High-Throughput Imaging Approaches.

Authors:  Prabhakar R Gudla; Koh Nakayama; Gianluca Pegoraro; Tom Misteli
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2017-11-28

5.  A robust unsupervised machine-learning method to quantify the morphological heterogeneity of cells and nuclei.

Authors:  Jude M Phillip; Kyu-Sang Han; Wei-Chiang Chen; Denis Wirtz; Pei-Hsun Wu
Journal:  Nat Protoc       Date:  2021-01-11       Impact factor: 13.491

6.  2.5D microscopy: Fast, high-throughput imaging via volumetric projection for quantitative subcellular analysis.

Authors:  Jinhan Ren; Kyu Young Han
Journal:  ACS Photonics       Date:  2021-02-25       Impact factor: 7.529

7.  High-throughput imaging of mRNA at the single-cell level in human primary immune cells.

Authors:  Manasi Gadkari; Jing Sun; Adrian Carcamo; Hugh Alessi; Zonghui Hu; Iain D C Fraser; Gianluca Pegoraro; Luis M Franco
Journal:  RNA       Date:  2022-06-28       Impact factor: 5.636

Review 8.  Design and Application of Sensors for Chemical Cytometry.

Authors:  Brianna M Vickerman; Matthew M Anttila; Brae V Petersen; Nancy L Allbritton; David S Lawrence
Journal:  ACS Chem Biol       Date:  2018-02-08       Impact factor: 5.100

9.  Harnessing the power of microscopy images to accelerate drug discovery: what are the possibilities?

Authors:  Justin Boyd; Myles Fennell; Anne Carpenter
Journal:  Expert Opin Drug Discov       Date:  2020-03-21       Impact factor: 6.098

Review 10.  Organizational principles of 3D genome architecture.

Authors:  M Jordan Rowley; Victor G Corces
Journal:  Nat Rev Genet       Date:  2018-12       Impact factor: 53.242

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