Literature DB >> 20360735

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Beate Neumann1, Thomas Walter, Jean-Karim Hériché, Jutta Bulkescher, Holger Erfle, Christian Conrad, Phill Rogers, Ina Poser, Michael Held, Urban Liebel, Cihan Cetin, Frank Sieckmann, Gregoire Pau, Rolf Kabbe, Annelie Wünsche, Venkata Satagopam, Michael H A Schmitz, Catherine Chapuis, Daniel W Gerlich, Reinhard Schneider, Roland Eils, Wolfgang Huber, Jan-Michael Peters, Anthony A Hyman, Richard Durbin, Rainer Pepperkok, Jan Ellenberg.   

Abstract

Despite our rapidly growing knowledge about the human genome, we do not know all of the genes required for some of the most basic functions of life. To start to fill this gap we developed a high-throughput phenotypic screening platform combining potent gene silencing by RNA interference, time-lapse microscopy and computational image processing. We carried out a genome-wide phenotypic profiling of each of the approximately 21,000 human protein-coding genes by two-day live imaging of fluorescently labelled chromosomes. Phenotypes were scored quantitatively by computational image processing, which allowed us to identify hundreds of human genes involved in diverse biological functions including cell division, migration and survival. As part of the Mitocheck consortium, this study provides an in-depth analysis of cell division phenotypes and makes the entire high-content data set available as a resource to the community.

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Year:  2010        PMID: 20360735      PMCID: PMC3108885          DOI: 10.1038/nature08869

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  22 in total

Review 1.  The molecular requirements for cytokinesis.

Authors:  Michael Glotzer
Journal:  Science       Date:  2005-03-18       Impact factor: 47.728

2.  Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference.

Authors:  Changjun Zhu; Jian Zhao; Marina Bibikova; Joel D Leverson; Ella Bossy-Wetzel; Jian-Bing Fan; Robert T Abraham; Wei Jiang
Journal:  Mol Biol Cell       Date:  2005-04-20       Impact factor: 4.138

3.  High-throughput RNAi screening by time-lapse imaging of live human cells.

Authors:  Beate Neumann; Michael Held; Urban Liebel; Holger Erfle; Phill Rogers; Rainer Pepperkok; Jan Ellenberg
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

Review 4.  Automated subcellular location determination and high-throughput microscopy.

Authors:  Estelle Glory; Robert F Murphy
Journal:  Dev Cell       Date:  2007-01       Impact factor: 12.270

5.  Reverse transfection on cell arrays for high content screening microscopy.

Authors:  Holger Erfle; Beate Neumann; Urban Liebel; Phill Rogers; Michael Held; Thomas Walter; Jan Ellenberg; Rainer Pepperkok
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

6.  Maximal chromosome compaction occurs by axial shortening in anaphase and depends on Aurora kinase.

Authors:  Felipe Mora-Bermúdez; Daniel Gerlich; Jan Ellenberg
Journal:  Nat Cell Biol       Date:  2007-06-10       Impact factor: 28.824

7.  Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.

Authors:  M V Boland; M K Markey; R F Murphy
Journal:  Cytometry       Date:  1998-11-01

8.  Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Authors:  B Sönnichsen; L B Koski; A Walsh; P Marschall; B Neumann; M Brehm; A-M Alleaume; J Artelt; P Bettencourt; E Cassin; M Hewitson; C Holz; M Khan; S Lazik; C Martin; B Nitzsche; M Ruer; J Stamford; M Winzi; R Heinkel; M Röder; J Finell; H Häntsch; S J M Jones; M Jones; F Piano; K C Gunsalus; K Oegema; P Gönczy; A Coulson; A A Hyman; C J Echeverri
Journal:  Nature       Date:  2005-03-24       Impact factor: 49.962

9.  Roles of polo-like kinase 1 in the assembly of functional mitotic spindles.

Authors:  Izabela Sumara; Juan F Giménez-Abián; Daniel Gerlich; Toru Hirota; Claudine Kraft; Consuelo de la Torre; Jan Ellenberg; Jan-Michael Peters
Journal:  Curr Biol       Date:  2004-10-05       Impact factor: 10.834

10.  Identification of pathways regulating cell size and cell-cycle progression by RNAi.

Authors:  Mikael Björklund; Minna Taipale; Markku Varjosalo; Juha Saharinen; Juhani Lahdenperä; Jussi Taipale
Journal:  Nature       Date:  2006-02-23       Impact factor: 49.962

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  410 in total

1.  Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Authors:  Jeremy C Simpson; Brigitte Joggerst; Vibor Laketa; Fatima Verissimo; Cihan Cetin; Holger Erfle; Mariana G Bexiga; Vasanth R Singan; Jean-Karim Hériché; Beate Neumann; Alvaro Mateos; Jonathon Blake; Stephanie Bechtel; Vladimir Benes; Stefan Wiemann; Jan Ellenberg; Rainer Pepperkok
Journal:  Nat Cell Biol       Date:  2012-06-03       Impact factor: 28.824

Review 2.  Prophase I arrest and progression to metaphase I in mouse oocytes: comparison of resumption of meiosis and recovery from G2-arrest in somatic cells.

Authors:  Petr Solc; Richard M Schultz; Jan Motlik
Journal:  Mol Hum Reprod       Date:  2010-05-07       Impact factor: 4.025

3.  A molecular mechanism underlying the neural-specific defect in torsinA mutant mice.

Authors:  Connie E Kim; Alex Perez; Guy Perkins; Mark H Ellisman; William T Dauer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1.

Authors:  P Moudry; C Lukas; L Macurek; B Neumann; J-K Heriche; R Pepperkok; J Ellenberg; Z Hodny; J Lukas; J Bartek
Journal:  Cell Death Differ       Date:  2011-11-11       Impact factor: 15.828

5.  CC2D1A is a regulator of ESCRT-III CHMP4B.

Authors:  Nicolas Martinelli; Bettina Hartlieb; Yoshiko Usami; Charles Sabin; Aurelien Dordor; Nolwenn Miguet; Sergiy V Avilov; Euripedes A Ribeiro; Heinrich Göttlinger; Winfried Weissenhorn
Journal:  J Mol Biol       Date:  2012-03-08       Impact factor: 5.469

6.  A framework for image-based classification of mitotic cells in asynchronous populations.

Authors:  Scott D Slattery; Justin Y Newberg; Adam T Szafran; Rebecca M Hall; Bill R Brinkley; Michael A Mancini
Journal:  Assay Drug Dev Technol       Date:  2011-11-15       Impact factor: 1.738

7.  Development of novel mouse hybridomas producing monoclonal antibodies specific to human and mouse nucleolar protein SURF-6.

Authors:  Mikhail A Polzikov; Maria Yu Kordyukova; Larisa E Zavalishina; Charalambos Magoulas; Olga V Zatsepina
Journal:  Hybridoma (Larchmt)       Date:  2012-02

8.  Microwell perfusion array for high-throughput, long-term imaging of clonal growth.

Authors:  Huaying Chen; Jingjing Li; Han Zhang; Musen Li; Gary Rosengarten; Robert E Nordon
Journal:  Biomicrofluidics       Date:  2011-12-15       Impact factor: 2.800

9.  Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.

Authors:  Robert Hoehndorf; Midori A Harris; Heinrich Herre; Gabriella Rustici; Georgios V Gkoutos
Journal:  Bioinformatics       Date:  2012-04-26       Impact factor: 6.937

10.  miR-125b promotes cell death by targeting spindle assembly checkpoint gene MAD1 and modulating mitotic progression.

Authors:  S Bhattacharjya; S Nath; J Ghose; G P Maiti; N Biswas; S Bandyopadhyay; C K Panda; N P Bhattacharyya; S Roychoudhury
Journal:  Cell Death Differ       Date:  2012-10-26       Impact factor: 15.828

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