Literature DB >> 24270810

High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy.

Samuel A Hasson1, Lesley A Kane2, Koji Yamano3, Chiu-Hui Huang3, Danielle A Sliter3, Eugen Buehler4, Chunxin Wang3, Sabrina M Heman-Ackah5, Tara Hessa3, Rajarshi Guha4, Scott E Martin4, Richard J Youle3.   

Abstract

An increasing body of evidence points to mitochondrial dysfunction as a contributor to the molecular pathogenesis of neurodegenerative diseases such as Parkinson's disease. Recent studies of the Parkinson's disease associated genes PINK1 (ref. 2) and parkin (PARK2, ref. 3) indicate that they may act in a quality control pathway preventing the accumulation of dysfunctional mitochondria. Here we elucidate regulators that have an impact on parkin translocation to damaged mitochondria with genome-wide small interfering RNA (siRNA) screens coupled to high-content microscopy. Screening yielded gene candidates involved in diverse cellular processes that were subsequently validated in low-throughput assays. This led to characterization of TOMM7 as essential for stabilizing PINK1 on the outer mitochondrial membrane following mitochondrial damage. We also discovered that HSPA1L (HSP70 family member) and BAG4 have mutually opposing roles in the regulation of parkin translocation. The screens revealed that SIAH3, found to localize to mitochondria, inhibits PINK1 accumulation after mitochondrial insult, reducing parkin translocation. Overall, our screens provide a rich resource to understand mitochondrial quality control.

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Year:  2013        PMID: 24270810      PMCID: PMC5841086          DOI: 10.1038/nature12748

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  30 in total

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Authors:  Jeremy C Simpson; Brigitte Joggerst; Vibor Laketa; Fatima Verissimo; Cihan Cetin; Holger Erfle; Mariana G Bexiga; Vasanth R Singan; Jean-Karim Hériché; Beate Neumann; Alvaro Mateos; Jonathon Blake; Stephanie Bechtel; Vladimir Benes; Stefan Wiemann; Jan Ellenberg; Rainer Pepperkok
Journal:  Nat Cell Biol       Date:  2012-06-03       Impact factor: 28.824

2.  Common seed analysis to identify off-target effects in siRNA screens.

Authors:  Shane Marine; Amit Bahl; Marc Ferrer; Eugen Buehler
Journal:  J Biomol Screen       Date:  2011-11-15

3.  Parkin overexpression selects against a deleterious mtDNA mutation in heteroplasmic cybrid cells.

Authors:  Der-Fen Suen; Derek P Narendra; Atsushi Tanaka; Giovanni Manfredi; Richard J Youle
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

4.  Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity.

Authors:  Aimee L Jackson; Julja Burchard; Janell Schelter; B Nelson Chau; Michele Cleary; Lee Lim; Peter S Linsley
Journal:  RNA       Date:  2006-05-08       Impact factor: 4.942

5.  Broad activation of the ubiquitin-proteasome system by Parkin is critical for mitophagy.

Authors:  Nickie C Chan; Anna M Salazar; Anh H Pham; Michael J Sweredoski; Natalie J Kolawa; Robert L J Graham; Sonja Hess; David C Chan
Journal:  Hum Mol Genet       Date:  2011-02-04       Impact factor: 6.150

6.  PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1.

Authors:  Sven Geisler; Kira M Holmström; Diana Skujat; Fabienne C Fiesel; Oliver C Rothfuss; Philipp J Kahle; Wolfdieter Springer
Journal:  Nat Cell Biol       Date:  2010-01-24       Impact factor: 28.824

7.  Computational analysis of the human HSPH/HSPA/DNAJ family and cloning of a human HSPH/HSPA/DNAJ expression library.

Authors:  Jurre Hageman; Harm H Kampinga
Journal:  Cell Stress Chaperones       Date:  2008-08-07       Impact factor: 3.667

8.  The PINK1-Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo.

Authors:  Evelyn S Vincow; Gennifer Merrihew; Ruth E Thomas; Nicholas J Shulman; Richard P Beyer; Michael J MacCoss; Leo J Pallanck
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-18       Impact factor: 11.205

9.  Mitochondrial membrane potential regulates PINK1 import and proteolytic destabilization by PARL.

Authors:  Seok Min Jin; Michael Lazarou; Chunxin Wang; Lesley A Kane; Derek P Narendra; Richard J Youle
Journal:  J Cell Biol       Date:  2010-11-29       Impact factor: 10.539

Review 10.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

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  138 in total

1.  High-content, full genome siRNA screen for regulators of oncogenic HRAS-driven macropinocytosis.

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Review 2.  High-Throughput Imaging for the Discovery of Cellular Mechanisms of Disease.

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Journal:  Trends Genet       Date:  2017-07-18       Impact factor: 11.639

3.  PHB2 (prohibitin 2) promotes PINK1-PRKN/Parkin-dependent mitophagy by the PARL-PGAM5-PINK1 axis.

Authors:  Chaojun Yan; Longlong Gong; Li Chen; Meng Xu; Hussein Abou-Hamdan; Mingliang Tang; Laurent Désaubry; Zhiyin Song
Journal:  Autophagy       Date:  2019-06-16       Impact factor: 16.016

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Review 5.  Concise review: modeling central nervous system diseases using induced pluripotent stem cells.

Authors:  Xianmin Zeng; Joshua G Hunsberger; Anton Simeonov; Nasir Malik; Ying Pei; Mahendra Rao
Journal:  Stem Cells Transl Med       Date:  2014-11-03       Impact factor: 6.940

6.  USP30 and parkin homeostatically regulate atypical ubiquitin chains on mitochondria.

Authors:  Christian N Cunningham; Joshua M Baughman; Lilian Phu; Joy S Tea; Christine Yu; Mary Coons; Donald S Kirkpatrick; Baris Bingol; Jacob E Corn
Journal:  Nat Cell Biol       Date:  2015-01-26       Impact factor: 28.824

Review 7.  Activation of the E3 ubiquitin ligase Parkin.

Authors:  Thomas R Caulfield; Fabienne C Fiesel; Wolfdieter Springer
Journal:  Biochem Soc Trans       Date:  2015-04       Impact factor: 5.407

8.  Mitochondria: the indispensable players in innate immunity and guardians of the inflammatory response.

Authors:  Abhishek Mohanty; Rashmi Tiwari-Pandey; Nihar R Pandey
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Review 9.  Mitophagy mechanisms and role in human diseases.

Authors:  Matthew Redmann; Matthew Dodson; Michaël Boyer-Guittaut; Victor Darley-Usmar; Jianhua Zhang
Journal:  Int J Biochem Cell Biol       Date:  2014-05-16       Impact factor: 5.085

Review 10.  Targeting Pink1-Parkin-mediated mitophagy for treating liver injury.

Authors:  Jessica A Williams; Wen-Xing Ding
Journal:  Pharmacol Res       Date:  2015-10-24       Impact factor: 7.658

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