Literature DB >> 28681390

A deep feature fusion methodology for breast cancer diagnosis demonstrated on three imaging modality datasets.

Natalia Antropova1, Benjamin Q Huynh1, Maryellen L Giger1.   

Abstract

BACKGROUND: Deep learning methods for radiomics/computer-aided diagnosis (CADx) are often prohibited by small datasets, long computation time, and the need for extensive image preprocessing. AIMS: We aim to develop a breast CADx methodology that addresses the aforementioned issues by exploiting the efficiency of pre-trained convolutional neural networks (CNNs) and using pre-existing handcrafted CADx features. MATERIALS &
METHODS: We present a methodology that extracts and pools low- to mid-level features using a pretrained CNN and fuses them with handcrafted radiomic features computed using conventional CADx methods. Our methodology is tested on three different clinical imaging modalities (dynamic contrast enhanced-MRI [690 cases], full-field digital mammography [245 cases], and ultrasound [1125 cases]).
RESULTS: From ROC analysis, our fusion-based method demonstrates, on all three imaging modalities, statistically significant improvements in terms of AUC as compared to previous breast cancer CADx methods in the task of distinguishing between malignant and benign lesions. (DCE-MRI [AUC = 0.89 (se = 0.01)], FFDM [AUC = 0.86 (se = 0.01)], and ultrasound [AUC = 0.90 (se = 0.01)]). DISCUSSION/
CONCLUSION: We proposed a novel breast CADx methodology that can be used to more effectively characterize breast lesions in comparison to existing methods. Furthermore, our proposed methodology is computationally efficient and circumvents the need for image preprocessing.
© 2017 American Association of Physicists in Medicine.

Entities:  

Keywords:  breast cancer; deep learning; feature extraction

Mesh:

Year:  2017        PMID: 28681390      PMCID: PMC5646225          DOI: 10.1002/mp.12453

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  19 in total

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3.  A fuzzy c-means (FCM)-based approach for computerized segmentation of breast lesions in dynamic contrast-enhanced MR images.

Authors:  Weijie Chen; Maryellen L Giger; Ulrich Bick
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4.  Volumetric texture analysis of breast lesions on contrast-enhanced magnetic resonance images.

Authors:  Weijie Chen; Maryellen L Giger; Hui Li; Ulrich Bick; Gillian M Newstead
Journal:  Magn Reson Med       Date:  2007-09       Impact factor: 4.668

5.  The "proper" binormal model: parametric receiver operating characteristic curve estimation with degenerate data.

Authors:  X Pan; C E Metz
Journal:  Acad Radiol       Date:  1997-05       Impact factor: 3.173

6.  Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?

Authors:  Nima Tajbakhsh; Jae Y Shin; Suryakanth R Gurudu; R Todd Hurst; Christopher B Kendall; Michael B Gotway
Journal:  IEEE Trans Med Imaging       Date:  2016-03-07       Impact factor: 10.048

7.  Digital mammographic tumor classification using transfer learning from deep convolutional neural networks.

Authors:  Benjamin Q Huynh; Hui Li; Maryellen L Giger
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8.  Evaluation of computer-aided diagnosis on a large clinical full-field digital mammographic dataset.

Authors:  Hui Li; Maryellen L Giger; Yading Yuan; Weijie Chen; Karla Horsch; Li Lan; Andrew R Jamieson; Charlene A Sennett; Sanaz A Jansen
Journal:  Acad Radiol       Date:  2008-11       Impact factor: 3.173

9.  Computerized analysis of breast lesions in three dimensions using dynamic magnetic-resonance imaging.

Authors:  K G Gilhuijs; M L Giger; U Bick
Journal:  Med Phys       Date:  1998-09       Impact factor: 4.071

10.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

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  73 in total

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Review 2.  Deep learning in breast radiology: current progress and future directions.

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4.  Automated prediction of dosimetric eligibility of patients with prostate cancer undergoing intensity-modulated radiation therapy using a convolutional neural network.

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5.  Knee menisci segmentation and relaxometry of 3D ultrashort echo time cones MR imaging using attention U-Net with transfer learning.

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Journal:  Magn Reson Med       Date:  2019-09-19       Impact factor: 4.668

6.  A collection input based support tensor machine for lesion malignancy classification in digital breast tomosynthesis.

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Journal:  Phys Med Biol       Date:  2019-12-05       Impact factor: 3.609

7.  Comparison of Breast MRI Tumor Classification Using Human-Engineered Radiomics, Transfer Learning From Deep Convolutional Neural Networks, and Fusion Methods.

Authors:  Heather M Whitney; Hui Li; Yu Ji; Peifang Liu; Maryellen L Giger
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-11-21       Impact factor: 10.961

8.  Transfer Learning From Convolutional Neural Networks for Computer-Aided Diagnosis: A Comparison of Digital Breast Tomosynthesis and Full-Field Digital Mammography.

Authors:  Kayla Mendel; Hui Li; Deepa Sheth; Maryellen Giger
Journal:  Acad Radiol       Date:  2018-08-01       Impact factor: 3.173

9.  Radiomics methodology for breast cancer diagnosis using multiparametric magnetic resonance imaging.

Authors:  Qiyuan Hu; Heather M Whitney; Maryellen L Giger
Journal:  J Med Imaging (Bellingham)       Date:  2020-08-24

10.  Impact of Machine Learning With Multiparametric Magnetic Resonance Imaging of the Breast for Early Prediction of Response to Neoadjuvant Chemotherapy and Survival Outcomes in Breast Cancer Patients.

Authors:  Amirhessam Tahmassebi; Georg J Wengert; Thomas H Helbich; Zsuzsanna Bago-Horvath; Sousan Alaei; Rupert Bartsch; Peter Dubsky; Pascal Baltzer; Paola Clauser; Panagiotis Kapetas; Elizabeth A Morris; Anke Meyer-Baese; Katja Pinker
Journal:  Invest Radiol       Date:  2019-02       Impact factor: 6.016

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