Literature DB >> 31205978

Neural network training for cross-protocol radiomic feature standardization in computed tomography.

Vincent Andrearczyk1, Adrien Depeursinge1,2, Henning Müller1,3.   

Abstract

Radiomics has shown promising results in several medical studies, yet it suffers from a limited discrimination and informative capability as well as a high variation and correlation with the tomographic scanner types, pixel spacing, acquisition protocol, and reconstruction parameters. We propose and compare two methods to transform quantitative image features in order to improve their stability across varying image acquisition parameters while preserving the texture discrimination abilities. In this way, variations in extracted features are representative of true physiopathological tissue changes in the scanned patients. A first approach is based on a two-layer neural network that can learn a nonlinear standardization transformation of various types of features including handcrafted and deep features. Second, domain adversarial training is explored to increase the invariance of the transformed features to the scanner of origin. The generalization of the proposed approach to unseen textures and unseen scanners is demonstrated by a set of experiments using a publicly available computed tomography texture phantom dataset scanned with various imaging devices and parameters.

Entities:  

Keywords:  deep learning; domain adversarial; quantitative imaging, radiomics; standardization

Year:  2019        PMID: 31205978      PMCID: PMC6553566          DOI: 10.1117/1.JMI.6.2.024008

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  24 in total

1.  Impact of Image Reconstruction Settings on Texture Features in 18F-FDG PET.

Authors:  Jianhua Yan; Jason Lim Chu-Shern; Hoi Yin Loi; Lih Kin Khor; Arvind K Sinha; Swee Tian Quek; Ivan W K Tham; David Townsend
Journal:  J Nucl Med       Date:  2015-07-30       Impact factor: 10.057

2.  The biology underlying molecular imaging in oncology: from genome to anatome and back again.

Authors:  R J Gillies; A R Anderson; R A Gatenby; D L Morse
Journal:  Clin Radiol       Date:  2010-07       Impact factor: 2.350

3.  Variability of textural features in FDG PET images due to different acquisition modes and reconstruction parameters.

Authors:  Paulina E Galavis; Christian Hollensen; Ngoneh Jallow; Bhudatt Paliwal; Robert Jeraj
Journal:  Acta Oncol       Date:  2010-10       Impact factor: 4.089

Review 4.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

5.  Measuring Computed Tomography Scanner Variability of Radiomics Features.

Authors:  Dennis Mackin; Xenia Fave; Lifei Zhang; David Fried; Jinzhong Yang; Brian Taylor; Edgardo Rodriguez-Rivera; Cristina Dodge; Aaron Kyle Jones; Laurence Court
Journal:  Invest Radiol       Date:  2015-11       Impact factor: 6.016

6.  Reproducibility and Prognosis of Quantitative Features Extracted from CT Images.

Authors:  Yoganand Balagurunathan; Yuhua Gu; Hua Wang; Virendra Kumar; Olya Grove; Sam Hawkins; Jongphil Kim; Dmitry B Goldgof; Lawrence O Hall; Robert A Gatenby; Robert J Gillies
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

7.  Stability of FDG-PET Radiomics features: an integrated analysis of test-retest and inter-observer variability.

Authors:  Ralph T H Leijenaar; Sara Carvalho; Emmanuel Rios Velazquez; Wouter J C van Elmpt; Chintan Parmar; Otto S Hoekstra; Corneline J Hoekstra; Ronald Boellaard; André L A J Dekker; Robert J Gillies; Hugo J W L Aerts; Philippe Lambin
Journal:  Acta Oncol       Date:  2013-09-09       Impact factor: 4.089

8.  Can radiomics features be reproducibly measured from CBCT images for patients with non-small cell lung cancer?

Authors:  Xenia Fave; Dennis Mackin; Jinzhong Yang; Joy Zhang; David Fried; Peter Balter; David Followill; Daniel Gomez; A Kyle Jones; Francesco Stingo; Jonas Fontenot; Laurence Court
Journal:  Med Phys       Date:  2015-12       Impact factor: 4.071

9.  Repeatability of Radiomic Features in Non-Small-Cell Lung Cancer [(18)F]FDG-PET/CT Studies: Impact of Reconstruction and Delineation.

Authors:  Floris H P van Velden; Gerbrand M Kramer; Virginie Frings; Ida A Nissen; Emma R Mulder; Adrianus J de Langen; Otto S Hoekstra; Egbert F Smit; Ronald Boellaard
Journal:  Mol Imaging Biol       Date:  2016-10       Impact factor: 3.488

10.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

View more
  3 in total

1.  The application of a workflow integrating the variable reproducibility and harmonizability of radiomic features on a phantom dataset.

Authors:  Abdalla Ibrahim; Turkey Refaee; Ralph T H Leijenaar; Sergey Primakov; Roland Hustinx; Felix M Mottaghy; Henry C Woodruff; Andrew D A Maidment; Philippe Lambin
Journal:  PLoS One       Date:  2021-05-07       Impact factor: 3.240

2.  Incorporating Robustness to Imaging Physics into Radiomic Feature Selection for Breast Cancer Risk Estimation.

Authors:  Raymond J Acciavatti; Eric A Cohen; Omid Haji Maghsoudi; Aimilia Gastounioti; Lauren Pantalone; Meng-Kang Hsieh; Emily F Conant; Christopher G Scott; Stacey J Winham; Karla Kerlikowske; Celine Vachon; Andrew D A Maidment; Despina Kontos
Journal:  Cancers (Basel)       Date:  2021-11-01       Impact factor: 6.639

3.  Prediction of Human Papillomavirus (HPV) Association of Oropharyngeal Cancer (OPC) Using Radiomics: The Impact of the Variation of CT Scanner.

Authors:  Reza Reiazi; Colin Arrowsmith; Mattea Welch; Farnoosh Abbas-Aghababazadeh; Christopher Eeles; Tony Tadic; Andrew J Hope; Scott V Bratman; Benjamin Haibe-Kains
Journal:  Cancers (Basel)       Date:  2021-05-08       Impact factor: 6.639

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.