Literature DB >> 27610399

Digital mammographic tumor classification using transfer learning from deep convolutional neural networks.

Benjamin Q Huynh1, Hui Li1, Maryellen L Giger1.   

Abstract

Convolutional neural networks (CNNs) show potential for computer-aided diagnosis (CADx) by learning features directly from the image data instead of using analytically extracted features. However, CNNs are difficult to train from scratch for medical images due to small sample sizes and variations in tumor presentations. Instead, transfer learning can be used to extract tumor information from medical images via CNNs originally pretrained for nonmedical tasks, alleviating the need for large datasets. Our database includes 219 breast lesions (607 full-field digital mammographic images). We compared support vector machine classifiers based on the CNN-extracted image features and our prior computer-extracted tumor features in the task of distinguishing between benign and malignant breast lesions. Five-fold cross validation (by lesion) was conducted with the area under the receiver operating characteristic (ROC) curve as the performance metric. Results show that classifiers based on CNN-extracted features (with transfer learning) perform comparably to those using analytically extracted features [area under the ROC curve [Formula: see text]]. Further, the performance of ensemble classifiers based on both types was significantly better than that of either classifier type alone ([Formula: see text] versus 0.81, [Formula: see text]). We conclude that transfer learning can improve current CADx methods while also providing standalone classifiers without large datasets, facilitating machine-learning methods in radiomics and precision medicine.

Entities:  

Keywords:  computer-aided diagnosis; convolutional neural networks; deep learning; mammography; precision medicine; radiomics; transfer learning

Year:  2016        PMID: 27610399      PMCID: PMC4992049          DOI: 10.1117/1.JMI.3.3.034501

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  11 in total

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3.  Volumetric texture analysis of breast lesions on contrast-enhanced magnetic resonance images.

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Review 4.  Anniversary paper: History and status of CAD and quantitative image analysis: the role of Medical Physics and AAPM.

Authors:  Maryellen L Giger; Heang-Ping Chan; John Boone
Journal:  Med Phys       Date:  2008-12       Impact factor: 4.071

5.  Mitosis detection in breast cancer pathology images by combining handcrafted and convolutional neural network features.

Authors:  Haibo Wang; Angel Cruz-Roa; Ajay Basavanhally; Hannah Gilmore; Natalie Shih; Mike Feldman; John Tomaszewski; Fabio Gonzalez; Anant Madabhushi
Journal:  J Med Imaging (Bellingham)       Date:  2014-10-10

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Journal:  Annu Rev Biomed Eng       Date:  2013-05-13       Impact factor: 9.590

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Journal:  Med Phys       Date:  1994-04       Impact factor: 4.071

9.  The meaning and use of the area under a receiver operating characteristic (ROC) curve.

Authors:  J A Hanley; B J McNeil
Journal:  Radiology       Date:  1982-04       Impact factor: 11.105

10.  Evaluation of computer-aided diagnosis on a large clinical full-field digital mammographic dataset.

Authors:  Hui Li; Maryellen L Giger; Yading Yuan; Weijie Chen; Karla Horsch; Li Lan; Andrew R Jamieson; Charlene A Sennett; Sanaz A Jansen
Journal:  Acad Radiol       Date:  2008-11       Impact factor: 3.173

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  76 in total

1.  Pulmonary nodule classification in lung cancer screening with three-dimensional convolutional neural networks.

Authors:  Shuang Liu; Yiting Xie; Artit Jirapatnakul; Anthony P Reeves
Journal:  J Med Imaging (Bellingham)       Date:  2017-11-14

2.  Bone Tumor Diagnosis Using a Naïve Bayesian Model of Demographic and Radiographic Features.

Authors:  Bao H Do; Curtis Langlotz; Christopher F Beaulieu
Journal:  J Digit Imaging       Date:  2017-10       Impact factor: 4.056

3.  Deep learning-based segmentation of malignant pleural mesothelioma tumor on computed tomography scans: application to scans demonstrating pleural effusion.

Authors:  Eyjolfur Gudmundsson; Christopher M Straus; Feng Li; Samuel G Armato
Journal:  J Med Imaging (Bellingham)       Date:  2020-01-29

4.  Integrative blockwise sparse analysis for tissue characterization and classification.

Authors:  Keni Zheng; Chelsea E Harris; Rachid Jennane; Sokratis Makrogiannis
Journal:  Artif Intell Med       Date:  2020-06-01       Impact factor: 5.326

Review 5.  Deep learning beyond cats and dogs: recent advances in diagnosing breast cancer with deep neural networks.

Authors:  Jeremy R Burt; Neslisah Torosdagli; Naji Khosravan; Harish RaviPrakash; Aliasghar Mortazi; Fiona Tissavirasingham; Sarfaraz Hussein; Ulas Bagci
Journal:  Br J Radiol       Date:  2018-04-10       Impact factor: 3.039

6.  Convolution neural networks for real-time needle detection and localization in 2D ultrasound.

Authors:  Cosmas Mwikirize; John L Nosher; Ilker Hacihaliloglu
Journal:  Int J Comput Assist Radiol Surg       Date:  2018-03-06       Impact factor: 2.924

Review 7.  AI-based computer-aided diagnosis (AI-CAD): the latest review to read first.

Authors:  Hiroshi Fujita
Journal:  Radiol Phys Technol       Date:  2020-01-02

8.  Using Convolutional Neural Networks for Enhanced Capture of Breast Parenchymal Complexity Patterns Associated with Breast Cancer Risk.

Authors:  Aimilia Gastounioti; Andrew Oustimov; Meng-Kang Hsieh; Lauren Pantalone; Emily F Conant; Despina Kontos
Journal:  Acad Radiol       Date:  2018-02-01       Impact factor: 3.173

9.  Comparison of Breast MRI Tumor Classification Using Human-Engineered Radiomics, Transfer Learning From Deep Convolutional Neural Networks, and Fusion Methods.

Authors:  Heather M Whitney; Hui Li; Yu Ji; Peifang Liu; Maryellen L Giger
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-11-21       Impact factor: 10.961

10.  Transfer Learning From Convolutional Neural Networks for Computer-Aided Diagnosis: A Comparison of Digital Breast Tomosynthesis and Full-Field Digital Mammography.

Authors:  Kayla Mendel; Hui Li; Deepa Sheth; Maryellen Giger
Journal:  Acad Radiol       Date:  2018-08-01       Impact factor: 3.173

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