Literature DB >> 28530708

Engineering RGB color vision into Escherichia coli.

Jesus Fernandez-Rodriguez1, Felix Moser1, Miryoung Song1, Christopher A Voigt1.   

Abstract

Optogenetic tools use colored light to rapidly control gene expression in space and time. We designed a genetically encoded system that gives Escherichia coli the ability to distinguish between red, green, and blue (RGB) light and respond by changing gene expression. We use this system to produce 'color photographs' on bacterial culture plates by controlling pigment production and to redirect metabolic flux by expressing CRISPRi guide RNAs.

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Year:  2017        PMID: 28530708     DOI: 10.1038/nchembio.2390

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  32 in total

1.  A light-switchable gene promoter system.

Authors:  Sae Shimizu-Sato; Enamul Huq; James M Tepperman; Peter H Quail
Journal:  Nat Biotechnol       Date:  2002-09-03       Impact factor: 54.908

2.  Multichromatic control of gene expression in Escherichia coli.

Authors:  Jeffrey J Tabor; Anselm Levskaya; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

Review 3.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

4.  A synthetic genetic edge detection program.

Authors:  Jeffrey J Tabor; Howard M Salis; Zachary Booth Simpson; Aaron A Chevalier; Anselm Levskaya; Edward M Marcotte; Christopher A Voigt; Andrew D Ellington
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

5.  Plate-based assays for light-regulated gene expression systems.

Authors:  Jeffrey J Tabor
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

6.  Refactoring and optimization of light-switchable Escherichia coli two-component systems.

Authors:  Sebastian R Schmidl; Ravi U Sheth; Andrew Wu; Jeffrey J Tabor
Journal:  ACS Synth Biol       Date:  2014-10-11       Impact factor: 5.110

Review 7.  A brief history of phytochromes.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Chemphyschem       Date:  2010-04-26       Impact factor: 3.102

Review 8.  Minimizing acetate formation in E. coli fermentations.

Authors:  Marjan De Mey; Sofie De Maeseneire; Wim Soetaert; Erick Vandamme
Journal:  J Ind Microbiol Biotechnol       Date:  2007-08-01       Impact factor: 3.346

9.  Optogenetics.

Authors:  Karl Deisseroth
Journal:  Nat Methods       Date:  2010-12-20       Impact factor: 28.547

10.  Designing and engineering evolutionary robust genetic circuits.

Authors:  Sean C Sleight; Bryan A Bartley; Jane A Lieviant; Herbert M Sauro
Journal:  J Biol Eng       Date:  2010-11-01       Impact factor: 4.355

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  53 in total

1.  Automated design of thousands of nonrepetitive parts for engineering stable genetic systems.

Authors:  Ayaan Hossain; Eriberto Lopez; Sean M Halper; Daniel P Cetnar; Alexander C Reis; Devin Strickland; Eric Klavins; Howard M Salis
Journal:  Nat Biotechnol       Date:  2020-07-13       Impact factor: 54.908

2.  Cell engineering: How to hack the genome.

Authors:  Jeffrey M Perkel
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

3.  Stochastic Turing patterns in a synthetic bacterial population.

Authors:  David Karig; K Michael Martini; Ting Lu; Nicholas A DeLateur; Nigel Goldenfeld; Ron Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

Review 4.  Engineering bacteria for diagnostic and therapeutic applications.

Authors:  David T Riglar; Pamela A Silver
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

Review 5.  Rational engineering of synthetic microbial systems: from single cells to consortia.

Authors:  Philip Bittihn; M Omar Din; Lev S Tsimring; Jeff Hasty
Journal:  Curr Opin Microbiol       Date:  2018-03-22       Impact factor: 7.934

6.  Modulation of Response Regulator CheY Reaction Kinetics by Two Variable Residues That Affect Conformation.

Authors:  Philip B Straughn; Luke R Vass; Chase Yuan; Emily N Kennedy; Clay A Foster; Robert B Bourret
Journal:  J Bacteriol       Date:  2020-07-09       Impact factor: 3.490

Review 7.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

8.  Near-infrared light-controlled systems for gene transcription regulation, protein targeting and spectral multiplexing.

Authors:  Taras A Redchuk; Andrii A Kaberniuk; Vladislav V Verkhusha
Journal:  Nat Protoc       Date:  2018-04-26       Impact factor: 13.491

9.  Phytochromes and Cyanobacteriochromes: Photoreceptor Molecules Incorporating a Linear Tetrapyrrole Chromophore.

Authors:  Keiji Fushimi; Rei Narikawa
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

10.  Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design.

Authors:  Shuyi Zhang; Christopher A Voigt
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

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