Literature DB >> 20155775

A brief history of phytochromes.

Nathan C Rockwell1, J Clark Lagarias.   

Abstract

Photosensory proteins enable living things to detect the quantity and quality of the light environment and to transduce that physical signal into biochemical outputs which entrain their metabolism with the ambient light environment. Phytochromes, which photoconvert between red-absorbing P(r) and far-red-absorbing P(fr) states, are the most extensively studied of these interesting proteins. Critical regulators of a number of key adaptive processes in higher plants, including photomorphogenesis and shade avoidance, phytochromes are widespread in photosynthetic and nonphotosynthetic bacteria, and even in fungi. Cyanobacterial genomes also possess a plethora of more distant relatives of phytochromes known as cyanobacteriochromes (CBCRs). Biochemical characterization of representative CBCRs has demonstrated that this class of photosensors exhibits a broad range of wavelength sensitivities, spanning the entire visible spectrum. Distinct protein-bilin interactions are responsible for this astonishing array of wavelength sensitivities. Despite this spectral diversity, all members of the extended family of phytochrome photosensors appear to share a common photochemical mechanism for light sensing: photoisomerization of the 15/16 double bond of the bilin chromophore.

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Year:  2010        PMID: 20155775      PMCID: PMC2880163          DOI: 10.1002/cphc.200900894

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  66 in total

1.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

2.  Cyanobacteriochrome TePixJ of Thermosynechococcus elongatus harbors phycoviolobilin as a chromophore.

Authors:  Takami Ishizuka; Rei Narikawa; Takayuki Kohchi; Mitsunori Katayama; Masahiko Ikeuchi
Journal:  Plant Cell Physiol       Date:  2007-08-22       Impact factor: 4.927

3.  The structure of a complete phytochrome sensory module in the Pr ground state.

Authors:  Lars-Oliver Essen; Jo Mailliet; Jon Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-17       Impact factor: 11.205

Review 4.  Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria.

Authors:  Masahiko Ikeuchi; Takami Ishizuka
Journal:  Photochem Photobiol Sci       Date:  2008-08-18       Impact factor: 3.982

5.  Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion.

Authors:  Andrew T Ulijasz; Gabriel Cornilescu; David von Stetten; Steve Kaminski; Maria Andrea Mroginski; Junrui Zhang; Devaki Bhaya; Peter Hildebrandt; Richard D Vierstra
Journal:  J Biol Chem       Date:  2008-05-14       Impact factor: 5.157

6.  A prokaryotic phytochrome.

Authors:  J Hughes; T Lamparter; F Mittmann; E Hartmann; W Gärtner; A Wilde; T Börner
Journal:  Nature       Date:  1997-04-17       Impact factor: 49.962

7.  Chromophore selectivity in bacterial phytochromes: dissecting the process of chromophore attachment.

Authors:  Benjamin Quest; Wolfgang Gärtner
Journal:  Eur J Biochem       Date:  2004-03

8.  Inactivation of phytochrome- and phycobiliprotein-chromophore precursors by rat liver biliverdin reductase.

Authors:  M J Terry; M D Maines; J C Lagarias
Journal:  J Biol Chem       Date:  1993-12-15       Impact factor: 5.157

Review 9.  The structure of phytochrome: a picture is worth a thousand spectra.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Cell       Date:  2006-01       Impact factor: 11.277

10.  Gene silencing in the marine diatom Phaeodactylum tricornutum.

Authors:  Valentina De Riso; Raffaella Raniello; Florian Maumus; Alessandra Rogato; Chris Bowler; Angela Falciatore
Journal:  Nucleic Acids Res       Date:  2009-05-31       Impact factor: 16.971

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  109 in total

1.  Structure-guided engineering enhances a phytochrome-based infrared fluorescent protein.

Authors:  Michele E Auldridge; Kenneth A Satyshur; David M Anstrom; Katrina T Forest
Journal:  J Biol Chem       Date:  2011-12-30       Impact factor: 5.157

2.  Light-dependent attenuation of phycoerythrin gene expression reveals convergent evolution of green light sensing in cyanobacteria.

Authors:  Ryan P Bezy; Lisa Wiltbank; David M Kehoe
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

Review 3.  Photobodies in light signaling.

Authors:  Elise K Van Buskirk; Peter V Decker; Meng Chen
Journal:  Plant Physiol       Date:  2011-09-27       Impact factor: 8.340

4.  Fluorescence of phytochrome adducts with synthetic locked chromophores.

Authors:  Benjamin Zienicke; Li-Yi Chen; Htoi Khawn; Mostafa A S Hammam; Hideki Kinoshita; Johannes Reichert; Anne S Ulrich; Katsuhiko Inomata; Tilman Lamparter
Journal:  J Biol Chem       Date:  2010-11-11       Impact factor: 5.157

5.  Molecular Basis of Spectral Diversity in Near-Infrared Phytochrome-Based Fluorescent Proteins.

Authors:  Daria M Shcherbakova; Mikhail Baloban; Sergei Pletnev; Vladimir N Malashkevich; Hui Xiao; Zbigniew Dauter; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2015-11-19

6.  Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes.

Authors:  Nathan C Rockwell; J Clark Lagarias; Debashish Bhattacharya
Journal:  Front Ecol Evol       Date:  2014

7.  Multichromatic control of gene expression in Escherichia coli.

Authors:  Jeffrey J Tabor; Anselm Levskaya; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

8.  Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis.

Authors:  Yu-Rong Chen; Yi-shin Su; Shih-Long Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

9.  The D-ring, not the A-ring, rotates in Synechococcus OS-B' phytochrome.

Authors:  Chen Song; Georgios Psakis; Jakub Kopycki; Christina Lang; Jörg Matysik; Jon Hughes
Journal:  J Biol Chem       Date:  2013-12-10       Impact factor: 5.157

10.  Xanthomonas campestris attenuates virulence by sensing light through a bacteriophytochrome photoreceptor.

Authors:  Hernán R Bonomi; Laila Toum; Gabriela Sycz; Rodrigo Sieira; Andrés M Toscani; Gustavo E Gudesblat; Federico C Leskow; Fernando A Goldbaum; Adrián A Vojnov; Florencia Malamud
Journal:  EMBO Rep       Date:  2016-09-12       Impact factor: 8.807

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