Literature DB >> 21035461

Multichromatic control of gene expression in Escherichia coli.

Jeffrey J Tabor1, Anselm Levskaya, Christopher A Voigt.   

Abstract

Light is a powerful tool for manipulating living cells because it can be applied with high resolution across space and over time. We previously constructed a red light-sensitive Escherichia coli transcription system based on a chimera between the red/far-red switchable cyanobacterial phytochrome Cph1 and the E. coli EnvZ/OmpR two-component signaling pathway. Here, we report the development of a green light-inducible transcription system in E. coli based on a recently discovered green/red photoswitchable two-component system from cyanobacteria. We demonstrate that the transcriptional output is proportional to the intensity of green light applied and that the green sensor is orthogonal to the red sensor at intensities of 532-nm light less than 0.01 W/m(2). Expression of both sensors in a single cell allows two-color optical control of transcription both in batch culture and in patterns across a lawn of engineered cells. Because each sensor functions as a photoreversible switch, this system should allow the spatial and temporal control of the expression of multiple genes through different combinations of light wavelengths. This feature aids precision single-cell and population-level studies in systems and synthetic biology. Copyright Â
© 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21035461      PMCID: PMC3053042          DOI: 10.1016/j.jmb.2010.10.038

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  37 in total

1.  Genetic engineering of phytochrome biosynthesis in bacteria.

Authors:  G A Gambetta; J C Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

2.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

3.  Creating random mutagenesis libraries by megaprimer PCR of whole plasmid (MEGAWHOP).

Authors:  Kentaro Miyazaki
Journal:  Methods Mol Biol       Date:  2003

4.  A light-switchable gene promoter system.

Authors:  Sae Shimizu-Sato; Enamul Huq; James M Tepperman; Peter H Quail
Journal:  Nat Biotechnol       Date:  2002-09-03       Impact factor: 54.908

5.  Limitations of quantitative gene regulation models: a case study.

Authors:  Philip M Kim; Bruce Tidor
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

6.  Programmable cells: interfacing natural and engineered gene networks.

Authors:  Hideki Kobayashi; Mads Kaern; Michihiro Araki; Kristy Chung; Timothy S Gardner; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

7.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 8.  Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs.

Authors:  J E Ferrell
Journal:  Trends Biochem Sci       Date:  1996-12       Impact factor: 13.807

9.  A cyanobacterial phytochrome two-component light sensory system.

Authors:  K C Yeh; S H Wu; J T Murphy; J C Lagarias
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

10.  Activation of bacterial porin gene expression by a chimeric signal transducer in response to aspartate.

Authors:  R Utsumi; R E Brissette; A Rampersaud; S A Forst; K Oosawa; M Inouye
Journal:  Science       Date:  1989-09-15       Impact factor: 47.728

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  78 in total

Review 1.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

2.  Rationally designed families of orthogonal RNA regulators of translation.

Authors:  Vivek K Mutalik; Lei Qi; Joao C Guimaraes; Julius B Lucks; Adam P Arkin
Journal:  Nat Chem Biol       Date:  2012-03-25       Impact factor: 15.040

Review 3.  Improving carbon fixation pathways.

Authors:  Daniel C Ducat; Pamela A Silver
Journal:  Curr Opin Chem Biol       Date:  2012-05-29       Impact factor: 8.822

Review 4.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

5.  Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Authors:  Premkumar Jayaraman; Kavya Devarajan; Tze Kwang Chua; Hanzhong Zhang; Erry Gunawan; Chueh Loo Poh
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

6.  Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes.

Authors:  Nathan C Rockwell; Shelley S Martin; Kateryna Feoktistova; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-28       Impact factor: 11.205

7.  Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins.

Authors:  Gurkan Guntas; Ryan A Hallett; Seth P Zimmerman; Tishan Williams; Hayretin Yumerefendi; James E Bear; Brian Kuhlman
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

8.  The development and characterization of an exogenous green-light-regulated gene expression system in marine cyanobacteria.

Authors:  Amr Badary; Koichi Abe; Stefano Ferri; Katsuhiro Kojima; Koji Sode
Journal:  Mar Biotechnol (NY)       Date:  2015-02-01       Impact factor: 3.619

9.  Light-Controlled Cell Factories: Employing Photocaged Isopropyl-β-d-Thiogalactopyranoside for Light-Mediated Optimization of lac Promoter-Based Gene Expression and (+)-Valencene Biosynthesis in Corynebacterium glutamicum.

Authors:  Dennis Binder; Jonas Frohwitter; Regina Mahr; Claus Bier; Alexander Grünberger; Anita Loeschcke; Petra Peters-Wendisch; Dietrich Kohlheyer; Jörg Pietruszka; Julia Frunzke; Karl-Erich Jaeger; Volker F Wendisch; Thomas Drepper
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

10.  Engineering Escherichia coli for light-activated cytolysis of mammalian cells.

Authors:  Michael S Magaraci; Avin Veerakumar; Peter Qiao; Ashwin Amurthur; Justin Y Lee; Jordan S Miller; Mark Goulian; Casim A Sarkar
Journal:  ACS Synth Biol       Date:  2014-01-14       Impact factor: 5.110

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