Literature DB >> 29891706

Stochastic Turing patterns in a synthetic bacterial population.

David Karig1,2, K Michael Martini3, Ting Lu4, Nicholas A DeLateur5, Nigel Goldenfeld6, Ron Weiss7.   

Abstract

The origin of biological morphology and form is one of the deepest problems in science, underlying our understanding of development and the functioning of living systems. In 1952, Alan Turing showed that chemical morphogenesis could arise from a linear instability of a spatially uniform state, giving rise to periodic pattern formation in reaction-diffusion systems but only those with a rapidly diffusing inhibitor and a slowly diffusing activator. These conditions are disappointingly hard to achieve in nature, and the role of Turing instabilities in biological pattern formation has been called into question. Recently, the theory was extended to include noisy activator-inhibitor birth and death processes. Surprisingly, this stochastic Turing theory predicts the existence of patterns over a wide range of parameters, in particular with no severe requirement on the ratio of activator-inhibitor diffusion coefficients. To explore whether this mechanism is viable in practice, we have genetically engineered a synthetic bacterial population in which the signaling molecules form a stochastic activator-inhibitor system. The synthetic pattern-forming gene circuit destabilizes an initially homogenous lawn of genetically engineered bacteria, producing disordered patterns with tunable features on a spatial scale much larger than that of a single cell. Spatial correlations of the experimental patterns agree quantitatively with the signature predicted by theory. These results show that Turing-type pattern-forming mechanisms, if driven by stochasticity, can potentially underlie a broad range of biological patterns. These findings provide the groundwork for a unified picture of biological morphogenesis, arising from a combination of stochastic gene expression and dynamical instabilities.

Entities:  

Keywords:  Turing patterns; biofilm; signaling molecules; stochastic gene expression; synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29891706      PMCID: PMC6042114          DOI: 10.1073/pnas.1720770115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Pattern formation inside bacteria: fluctuations due to the low copy number of proteins.

Authors:  Martin Howard; Andrew D Rutenberg
Journal:  Phys Rev Lett       Date:  2003-03-27       Impact factor: 9.161

2.  Sequential establishment of stripe patterns in an expanding cell population.

Authors:  Chenli Liu; Xiongfei Fu; Lizhong Liu; Xiaojing Ren; Carlos K L Chau; Sihong Li; Lu Xiang; Hualing Zeng; Guanhua Chen; Lei-Han Tang; Peter Lenz; Xiaodong Cui; Wei Huang; Terence Hwa; Jian-Dong Huang
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

3.  Experimental evidence of a sustained standing Turing-type nonequilibrium chemical pattern.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-06-11       Impact factor: 9.161

4.  The influence of gene expression time delays on Gierer-Meinhardt pattern formation systems.

Authors:  S Seirin Lee; E A Gaffney; N A M Monk
Journal:  Bull Math Biol       Date:  2010-03-23       Impact factor: 1.758

5.  Predator-prey cycles from resonant amplification of demographic stochasticity.

Authors:  A J McKane; T J Newman
Journal:  Phys Rev Lett       Date:  2005-06-02       Impact factor: 9.161

6.  High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals.

Authors:  Luciano Marcon; Xavier Diego; James Sharpe; Patrick Müller
Journal:  Elife       Date:  2016-04-08       Impact factor: 8.140

7.  Modeling digits. Digit patterning is controlled by a Bmp-Sox9-Wnt Turing network modulated by morphogen gradients.

Authors:  J Raspopovic; L Marcon; L Russo; J Sharpe
Journal:  Science       Date:  2014-08-01       Impact factor: 47.728

8.  On the spontaneous emergence of cell polarity.

Authors:  Steven J Altschuler; Sigurd B Angenent; Yanqin Wang; Lani F Wu
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

9.  Robust stochastic Turing patterns in the development of a one-dimensional cyanobacterial organism.

Authors:  Francesca Di Patti; Laura Lavacchi; Rinat Arbel-Goren; Leora Schein-Lubomirsky; Duccio Fanelli; Joel Stavans
Journal:  PLoS Biol       Date:  2018-05-04       Impact factor: 8.029

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

View more
  27 in total

1.  Dispersal-induced instability in complex ecosystems.

Authors:  Joseph W Baron; Tobias Galla
Journal:  Nat Commun       Date:  2020-11-27       Impact factor: 14.919

Review 2.  Advances and challenges in programming pattern formation using living cells.

Authors:  Jia Lu; Emrah Şimşek; Anita Silver; Lingchong You
Journal:  Curr Opin Chem Biol       Date:  2022-04-23       Impact factor: 8.972

Review 3.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21

4.  Spontaneous Patterning during Frontal Polymerization.

Authors:  Evan M Lloyd; Elizabeth C Feinberg; Yuan Gao; Suzanne R Peterson; Bhaskar Soman; Julie Hemmer; Leon M Dean; Qiong Wu; Philippe H Geubelle; Nancy R Sottos; Jeffrey S Moore
Journal:  ACS Cent Sci       Date:  2021-03-24       Impact factor: 14.553

Review 5.  Synthetic spatial patterning in bacteria: advances based on novel diffusible signals.

Authors:  Martina Oliver Huidobro; Jure Tica; Georg K A Wachter; Mark Isalan
Journal:  Microb Biotechnol       Date:  2021-11-29       Impact factor: 6.575

6.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

7.  Engineered cell-to-cell signalling within growing bacterial cellulose pellicles.

Authors:  Kenneth T Walker; Vivianne J Goosens; Akashaditya Das; Alicia E Graham; Tom Ellis
Journal:  Microb Biotechnol       Date:  2018-11-21       Impact factor: 5.813

Review 8.  Engineering pattern formation and morphogenesis.

Authors:  Jamie A Davies; Fokion Glykofrydis
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

9.  Multiplexing cell-cell communication.

Authors:  John T Sexton; Jeffrey J Tabor
Journal:  Mol Syst Biol       Date:  2020-07       Impact factor: 11.429

10.  Majority sensing in synthetic microbial consortia.

Authors:  Razan N Alnahhas; Mehdi Sadeghpour; Ye Chen; Alexis A Frey; William Ott; Krešimir Josić; Matthew R Bennett
Journal:  Nat Commun       Date:  2020-07-21       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.