| Literature DB >> 28129324 |
Géraldine Daneau1, Said Aboud2, Irena Prat3, Willy Urassa3, Luc Kestens1,4.
Abstract
BACKGROUND: CD4 T-cell counts are widely used to assess treatment eligibility and to follow-up HIV-infected patients. The World Health Organization prequalification of in vitro diagnostics program conducted a performance evaluation of the FACSPresto (BD Biosciences), a new point-of-care instrument to measure absolute CD4-T cell (CD4) counts and percentages in venous and capillary blood samples from HIV-infected patients.Entities:
Mesh:
Year: 2017 PMID: 28129324 PMCID: PMC5271305 DOI: 10.1371/journal.pone.0170248
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Coefficient of variation (%CV) for the different precisions assays.
| Site and category (CD4/μL) | n | Instrument (capillary) | Instrument (venous) | Intra-assay (venous) | Inter-assay (venous) | Inter-instrument (venous) | Reproducibility (venous) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CD4 | CD4% | CD4 | CD4% | CD4 | CD4% | CD4 | CD4% | CD4 | CD4% | CD4 | CD4% | ||
| 1.5 | 1.4 | 2.3 | 1.9 | 4.9 | 4.3 | 7.3 | 5.7 | 1.3 | 1.1 | - | - | ||
| 1.7 | 1.6 | 3.0 | 2.7 | 6.1 | 5.0 | 11.7 | 7.7 | 2.5 | 2.1 | - | - | ||
| 1.2 | 1.1 | 1.5 | 1.2 | 5.2 | 4.3 | 6.6 | 7.7 | 0.5 | 0.6 | - | - | ||
| 1.5 | 1.4 | 2.4 | 1.7 | 3.5 | 3.6 | 3.6 | 1.8 | 0.7 | 0.4 | - | - | ||
| 6.8 | 7.5 | ||||||||||||
| 3.4 | 2.9 | 3.5 | 4.0 | 7.0 | 7.9 | 7.5 | 8.5 | - | - | - | - | ||
| - | - | - | - | - | - | 5,0 | 5.3 | 3.3 | 2.7 | 4.3 | 3.7 | ||
| - | - | - | - | - | - | - | - | 0.7 | 0.8 | 0.8 | 1.6 | ||
| 2.5 | 2.1 | 2.9 | 3.0 | 5.9 | 5.9 | 7.0 | 6.7 | 1.5 | 1.3 | 2.6 | 2.7 | ||
Mean precision (%CV, coefficient of variation) in Antwerp and in Dar es Salaam, for different CD4 categories. Number of samples (n), except for instrument precision with n = 15 ($), with 5 in each category (*), and for inter-assay in Antwerp with n = 3 per category (*), and in Dar es Salaam (#) with n = 7 for 100–300 CD4/μL, and 3 for 301–500 CD4/μL. For inter-instrument, and for reproducibility in Dar es Salaam, n = 2 in each category (none for 100–300 in Dar es Salaam).
FACSPresto performance with venous blood on FACSPresto compared to FACSCalibur (reference).
| Antwerp | Dar es Salaam | |||||
|---|---|---|---|---|---|---|
| n | CD4 cells/μL | CD4% | n | CD4 cells/μL | CD4% | |
| 196 | y = 0.23+1.03x | y = 0.37+0.99x | 230 | y = 8,72+1,11x | y = 0,02+1,03x | |
| (1.00;1.05) | (0.97;1.01) | (1.08;1.14) | (1.01;1.04) | |||
| 196 | 0.983 | 0.985 | 230 | 0.974 | 0.993 | |
| cells/μL | % | cells/μL | % | |||
| 196 | 12 (-63;+87) | 0.1 (-2.7;+3.0) | 230 | 41 (-64;+146) | 0.4 (-2.0;+2.8) | |
| 16 | 5 (-28;+38) | -0.2 (-1.8;+1.4) | 75 | 27 (-30;+83) | 0.0 (-2.2;+2.3) | |
| 108 | 13 (-54;+81) | 0.2 (-3.1;+3.4) | 110 | 50 (-58;+158) | 0.5 (-2.0;+3.1) | |
| 72 | 12 (-79;+103) | 0.2 (-2.1;+2.5) | 45 | 45 (-100;+189) | 0.8 (-1.2;+2.8) | |
| % | % | % | % | |||
| 196 | 2.5 (-15;+20) | 0.6 (-11;+13) | 230 | 15 (-17;+46) | 2.6 (-16;+21) | |
| 16 | 0.4 (-24;+25) | -2.5 (-16;+11) | 75 | 20 (-17;+57) | 2.5 (-26;+31) | |
| 108 | 3.3 (-16;+22) | 1.0 (-13;+15) | 110 | 14 (-15;+43) | 2.7 (-11;+16) | |
| 72 | 1.9 (-10;+14) | 0.7 (-6.4;+7.9) | 45 | 6.3 (-15;+28) | 2.8 (-4.0;+9.6) | |
Regression with Passing-Bablok analysis, Correlation with Spearman’s ρ coefficient, absolute bias with Bland-Altman analysis, relative bias with Pollock analysis. Due to outlier exclusion,
$ n+1 for CD4%.
LOA: limits of agreement. Low CD4 ≤ 200 cells/μL, middle 201–500 cells/μL, high CD4 > 500 cells/μL.
* for p-value < 0.05,
** p < 0.01,
*** p < 0.001 to compare mentioned parameter between sites (Dar es Salaam vs Antwerp).
FACSPresto performance with capillary blood on FACSPresto compared to FACSCalibur (reference).
| Antwerp | Dar es Salaam | |||||
|---|---|---|---|---|---|---|
| n | CD4 cells/μL | CD4% | n | CD4 cells/μL | CD4% | |
| 193 | y = 0.55+1.04x | y = 0.07+1.03x | 224 | y = 9.88+1,25x | y = -0,29+1,01x | |
| (1.00;1.08) | (1.00;1.06) | (1.20;1.29) | (0.99;1.03) | |||
| 193 | 0.966 | 0.973 | 224 | 0.939 | 0.988 | |
| cells/μL | % | cells/μL | % | |||
| 193 | 24 (-122;+169) | 0.9 (-3.1;+4.8) | 224 | 83 (-97;+262) | -0.3 (-3.2;+2.7) | |
| 16 | 15 (-34;+63) | -0.1 (-2.3;+2.1) | 76 | 43 (-25;111) | -0.5 (-3.5;+2.5) | |
| 105 | 21 (-79;+121) | 0.8 (-3.3;+4.8) | 104 | 100 (-49;+249) | -0.3 (-3.4;+2.8) | |
| 72 | 29 (-176;+235) | 1.2 (-2.7;+5.1) | 44 | 109 (-188;+407) | 0.1 (-2.4;+2.6) | |
| % | % | % | % | |||
| 193 | 4.7 (-26;+35) | 3.2 (-13;+20) | 224 | 26 (-12;+63) | -2.7 (-29;+23) | |
| 16 | 6.3 (-35;+48) | -2.0 (-27;+23) | 76 | 31 (-14;+75) | -5.6 (-45;+33) | |
| 105 | 4.9 (-26;+36) | 3.4 (-13;+20) | 104 | 26 (-5.1;+57) | -1.9 (-19;+15) | |
| 72 | 4.1 (-22;+30) | 4.0 (-8.9;+17) | 44 | 16 (-18;+49) | 0.4 (-8.5;+9.4) | |
Regression with Passing-Bablok analysis, Correlation with Spearman’s ρ coefficient, absolute bias with Bland-Altman analysis, relative bias with Pollock analysis. Due to outlier exclusion,
$ n-2 for CD4%;
& n-4 for CD4%.
LOA: limits of agreement. Low CD4 ≤ 200 cells/μL, middle 201–500 cells/μL, high CD4 > 500 cells/μL.
* for p-value < 0.05,
** p < 0.01,
*** p < 0.001 to compare mentioned parameter between sites (Dar es Salaam vs Antwerp).
# for p-value < 0.05,
## p < 0.01,
### p < 0.001 to compare mentioned parameter with Venous blood performance (Table 3 versus Table 2).
FACSPresto performance with venous and capillary blood on FACSPresto, compared to each other’s.
| Antwerp | Dar es Salaam | |||||
|---|---|---|---|---|---|---|
| n | CD4 cells/μL | CD4% | n | CD4 cells/μL | CD4% | |
| 193 | y = 4.00+1.00x | y = -0.50+1.04x | 217 | y = -1,19+1,12x | y = -0,32+0,98x | |
| (0.97;1.04) | (1.01;1.07) | (1.09;1.15) | (0.96;1.00) | |||
| 193 | 0.967 | 0.974 | 217 | 0.980 | 0.986 | |
| cells/μL | % | cells/μL | % | |||
| 193 | 11 (-121;+143) | 0.7 (-3.2;+4.6) | 217 | 44 (-66;+154) | -0.7 (-4.0;+2.5) | |
| 16 | 10 (-50;+69) | 0.1 (-2.8;+3.0) | 71 | 16 (-41;+73) | -0.4 (-3.4;+2.6) | |
| 105 | 10 (-88;+107) | 0.5 (-3.4;+4.4) | 103 | 49 (-64;+161) | -1.0 (-4.6;+2.6) | |
| 72 | 14 (-166;+193) | 1.1 (-2.9;+5.0) | 43 | 79 (-49;+206) | -0.7 (-3.6;2.2) | |
| % | % | % | % | |||
| 192 | 3.1 (-30;+36) | 3.0 (-21;+27) | 217 | 11 (-21;+43) | -5.4 (-31;+20) | |
| 16 | 5.7 (-40;+51) | 0.5 (-25;+26) | 71 | 9.7 (-36;+55) | -7.5 (-46;+31) | |
| 105 | 3.7 (-33;+41) | 3.2 (-25;+32) | 103 | 12 (-13;+36) | -5.2 (-22;+11) | |
| 72 | 1.7 (-22;+25) | 3.3 (-9.4;+16) | 42 | 11 (-6.6;+28) | -2.3 (-12;+7.4) | |
Regression with Passing-Bablok analysis, Correlation with Spearman’s ρ coefficient, absolute bias with Bland-Altman analysis, relative bias with Pollock analysis. Due to outlier exclusion,
$ n-1 for CD4%.
LOA: limits of agreement. Low CD4 ≤ 200 cells/μL, middle 201–500 cells/μL, high CD4 > 500 cells/μL.
* for p-value < 0.05,
** p < 0.01,
*** p < 0.001 to compare mentioned parameter between sites (Dar es Salaam vs Antwerp).
# for p-value < 0.05,
## p < 0.01,
### p < 0.001 to compare mentioned parameter with venous blood versus reference (Table 4 versus Table 2).
Fig 1Pollock analysis for absolute CD4 counts.
Relative bias data (%) from Antwerp (left) and Dar es Salaam (right), with CD4 results (cells/μL) obtained by FACSPresto (Presto) using venous (upper) and capillary blood (midden), each compared to reference (Calibur), and to one another’ (lower). Mean bias is represented by the horizontal solid blue line, with the long-dashed brown line for limits of agreement (= 1.96SD), each mentioned with respective value.
Fig 2Bland-Altman analysis for CD4%.
Absolute bias data (%) from Antwerp (left) and Dar es Salaam (right), with value on FACSPresto (Presto) using venous (upper) and capillary blood (midden), each compared to reference (Calibur), and compared to each others’ (lower). Mean bias is represented by the horizontal solid blue line, with the long-dashed brown for limits of agreement (= 1.96SD), each mentioned with respective value.
Clinical misclassification of FACSPresto for venous and capillary blood versus FACSCalibur, at strict thresholds ≤ 200, 350 and 500 cells/μL.
| Decision | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Venous blood | Capillary blood | Venous blood | Capillary blood | Venous blood | Capillary blood | |||||
| Dar es Salaam | Dar es Salaam | Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | |
| 230 | 224 | 196 | 230 | 193 | 224 | 196 | 230 | 193 | 224 | |
| 33 | 33 | 36 | 63 | 36 | 63 | 67 | 80 | 63 | 79 | |
| 0.746 | 0.642 | 0.761 | 0.767 | 0.770 | 0.643 | 0.893 | 0.643 | 0.819 | 0.568 | |
| 71 | 57 | 77 | 84 | 79 | 72 | 93 | 85 | 89 | 79 | |
| 99 | 100 | 96 | 97 | 96 | 98 | 99 | 92 | 96 | 98 | |
Clinical misclassification was calculated for CD4 counts at clinically relevant CD4 thresholds of 200, 350, 500 cells/μL, using the reference method results as the “true” value for disease diagnostics. Inter-rater agreement was calculated with the Kappa coefficient.
Absolute bias (cells/μL) between FACSPresto and FACSCalibur in misclassified samples at 350 cells/μL.
| Venous blood | Capillary blood | Venous blood | Capillary blood | |||||
|---|---|---|---|---|---|---|---|---|
| Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | Antwerp | Dar es Salaam | |
| 5 | 3 | 5 | 2 | 15 | 16 | 13 | 31 | |
| -35 | -152 | -49 | -139 | 46 | 89 | 65 | 121 | |
| 6 | 90 | 37 | 61 | 26 | 40 | 36 | 41 | |
| -26 | -64 | -13 | -96 | 3 | 24 | 9 | 37 | |
| -42 | -243 | -102 | -182 | 104 | 200 | 128 | 232 | |
| 0 | 1 | 1 | 1 | 5 | 11 | 7 | 9 | |
| 0 | 2 | 1 | 1 | 1 | 3 | 2 | 21 | |