Literature DB >> 27732795

A Life Investigating Pathways That Repair Broken Chromosomes.

James E Haber1.   

Abstract

Double-strand breaks (DSBs) pose a severe challenge to genome integrity; consequently, cells have developed efficient mechanisms to repair DSBs through several pathways of homologous recombination and other nonhomologous end-joining processes. Much of our understanding of these pathways has come from the analysis of site-specific DSBs created by the HO endonuclease in the budding yeast Saccharomyces cerevisiae. I was fortunate to get in on the ground floor of analyzing the fate of synchronously induced DSBs through the study of what I coined "in vivo biochemistry." I have had the remarkable good fortune to profit from the development of new techniques that have permitted an ever more detailed dissection of these repair mechanisms, which are described here.

Entities:  

Keywords:  DNA damage checkpoint; DNA repair; autobiography; budding yeast mating type–switching; homologous recombination; nonhomologous end-joining; site-specific endonuclease

Mesh:

Substances:

Year:  2016        PMID: 27732795     DOI: 10.1146/annurev-genet-120215-035043

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  36 in total

Review 1.  Repair of a Site-Specific DNA Cleavage: Old-School Lessons for Cas9-Mediated Gene Editing.

Authors:  Danielle N Gallagher; James E Haber
Journal:  ACS Chem Biol       Date:  2017-11-14       Impact factor: 5.100

Review 2.  The role of fork stalling and DNA structures in causing chromosome fragility.

Authors:  Simran Kaushal; Catherine H Freudenreich
Journal:  Genes Chromosomes Cancer       Date:  2019-01-29       Impact factor: 5.006

Review 3.  Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Authors:  Hannah L Klein; Giedrė Bačinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M Fitzgerald; Belén Gómez-González; Sharik R Khan; Sandeep Kumar; Bryan A Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J Polleys; Christopher D Putnam; Elina A Radchenko; Anissia Ait Saada; Cynthia J Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andrés Aguilera; Juan Lucas Argueso; Catherine H Freudenreich; Susan M Gasser; Dmitry A Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C King; Richard D Kolodner; Andrei Kuzminov; Sarah Ae Lambert; Sang Eun Lee; Kyle M Miller; Sergei M Mirkin; Thomas D Petes; Susan M Rosenberg; Rodney Rothstein; Lorraine S Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova
Journal:  Microb Cell       Date:  2019-01-07

4.  High-Throughput Analysis of Heteroduplex DNA in Mitotic Recombination Products.

Authors:  Dionna Gamble; Yee Fang Hum; Sue Jinks-Robertson
Journal:  Methods Mol Biol       Date:  2021

5.  CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles.

Authors:  Brenda R Lemos; Adam C Kaplan; Ji Eun Bae; Alexander E Ferrazzoli; James Kuo; Ranjith P Anand; David P Waterman; James E Haber
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-13       Impact factor: 11.205

6.  RPA-mediated recruitment of Bre1 couples histone H2B ubiquitination to DNA replication and repair.

Authors:  Guangxue Liu; Jiaqi Yan; Xuejie Wang; Junliang Chen; Xin Wang; Yang Dong; Simin Zhang; Xiaoli Gan; Jun Huang; Xuefeng Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

Review 7.  DNA damage and tissue repair: What we can learn from planaria.

Authors:  Paul G Barghouth; Manish Thiruvalluvan; Melanie LeGro; Néstor J Oviedo
Journal:  Semin Cell Dev Biol       Date:  2018-05-03       Impact factor: 7.727

Review 8.  Checkpoint Responses to DNA Double-Strand Breaks.

Authors:  David P Waterman; James E Haber; Marcus B Smolka
Journal:  Annu Rev Biochem       Date:  2020-03-16       Impact factor: 23.643

9.  Systematic analysis of linker histone PTM hotspots reveals phosphorylation sites that modulate homologous recombination and DSB repair.

Authors:  Kuntal Mukherjee; Nolan English; Chance Meers; Hyojung Kim; Alex Jonke; Francesca Storici; Matthew Torres
Journal:  DNA Repair (Amst)       Date:  2019-11-29

Review 10.  Advances in genome editing through control of DNA repair pathways.

Authors:  Charles D Yeh; Christopher D Richardson; Jacob E Corn
Journal:  Nat Cell Biol       Date:  2019-12-02       Impact factor: 28.824

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