Literature DB >> 29727725

DNA damage and tissue repair: What we can learn from planaria.

Paul G Barghouth1, Manish Thiruvalluvan1, Melanie LeGro1, Néstor J Oviedo2.   

Abstract

Faithful renewal of aging and damaged tissues is central to organismal lifespan. Stem cells (SCs) generate the cellular progeny that replenish adult tissues across the body but this task becomes increasingly compromised over time. The age related decline in SC-mediated tissue maintenance is a multifactorial event that commonly affects genome integrity. The presence of DNA damage in SCs that are under continuous demand to divide poses a great risk for age-related disorders such as cancer. However, performing analysis of SCs with genomic instability and the DNA damage response during tissue renewal present significant challenges. Here we introduce an alternative experimental system based on the planaria flatworm Schmidtea mediterranea to address at the organismal level studies intersecting SC-mediated tissue renewal in the presence of genomic instability. Planaria have abundant SCs (neoblasts) that maintain high rates of cellular turnover and a variety of molecular tools have been developed to induce DNA damage and dissect how neoblasts respond to this stressor. S. mediterranea displays high evolutionary conservation of DNA repair mechanisms and signaling pathways regulating adult SCs. We describe genetically induced-DNA damage models and highlight body-wide signals affecting cellular decisions such as survival, proliferation, and death in the presence of genomic instability. We also discuss transcriptomic changes in the DNA damage response during injury repair and propose DNA repair as key component of tissue regeneration. Additional studies using planaria will provide insights about mechanisms regulating survival and growth of cells with DNA damage during tissue renewal and regeneration.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA damage; DNA double strand breaks; DNA repair; Invertebrates; Neoblasts; Planaria; Regeneration; Stem cells

Mesh:

Year:  2018        PMID: 29727725      PMCID: PMC7039696          DOI: 10.1016/j.semcdb.2018.04.013

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  142 in total

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Authors:  Serena Bologna; Veronika Altmannova; Emanuele Valtorta; Christiane Koenig; Prisca Liberali; Christian Gentili; Dorothea Anrather; Gustav Ammerer; Lucas Pelkmans; Lumir Krejci; Stefano Ferrari
Journal:  Cell Cycle       Date:  2015-06-17       Impact factor: 4.534

2.  Antagonistic Self-Organizing Patterning Systems Control Maintenance and Regeneration of the Anteroposterior Axis in Planarians.

Authors:  Tom Stückemann; James Patrick Cleland; Steffen Werner; Hanh Thi-Kim Vu; Robert Bayersdorf; Shang-Yun Liu; Benjamin Friedrich; Frank Jülicher; Jochen Christian Rink
Journal:  Dev Cell       Date:  2017-02-06       Impact factor: 12.270

3.  Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration.

Authors:  Daniel E Wagner; Irving E Wang; Peter W Reddien
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

4.  Planarian regeneration involves distinct stem cell responses to wounds and tissue absence.

Authors:  Danielle Wenemoser; Peter W Reddien
Journal:  Dev Biol       Date:  2010-06-19       Impact factor: 3.582

Review 5.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

6.  Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach.

Authors:  Jordi Solana; Damian Kao; Yuliana Mihaylova; Farah Jaber-Hijazi; Sunir Malla; Ray Wilson; Aziz Aboobaker
Journal:  Genome Biol       Date:  2012       Impact factor: 17.906

7.  SUMOylation of ATRIP potentiates DNA damage signaling by boosting multiple protein interactions in the ATR pathway.

Authors:  Ching-Shyi Wu; Jian Ouyang; Eiichiro Mori; Hai Dang Nguyen; Alexandre Maréchal; Alexander Hallet; David J Chen; Lee Zou
Journal:  Genes Dev       Date:  2014-07-01       Impact factor: 11.361

8.  In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians.

Authors:  Alyssa M Molinaro; Bret J Pearson
Journal:  Genome Biol       Date:  2016-04-27       Impact factor: 13.583

9.  DNA repair in species with extreme lifespan differences.

Authors:  Sheila L MacRae; Matthew McKnight Croken; R B Calder; Alexander Aliper; Brandon Milholland; Ryan R White; Alexander Zhavoronkov; Vadim N Gladyshev; Andrei Seluanov; Vera Gorbunova; Zhengdong D Zhang; Jan Vijg
Journal:  Aging (Albany NY)       Date:  2015-12       Impact factor: 5.682

10.  Longevity and resistance to stress correlate with DNA repair capacity in Caenorhabditis elegans.

Authors:  Moonjung Hyun; Jihyun Lee; Kyungjin Lee; Alfred May; Vilhelm A Bohr; Byungchan Ahn
Journal:  Nucleic Acids Res       Date:  2008-01-18       Impact factor: 16.971

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  9 in total

1.  Analysis of DNA Double-Stranded Breaks Using the Comet Assay in Planarians.

Authors:  Paul G Barghouth; Salvador Rojas; Lacey R O'Dell; Andrew M Betancourt; Néstor J Oviedo
Journal:  Methods Mol Biol       Date:  2022

2.  Eya2 promotes cell cycle progression by regulating DNA damage response during vertebrate limb regeneration.

Authors:  Konstantinos Sousounis; Donald M Bryant; Jose Martinez Fernandez; Samuel S Eddy; Stephanie L Tsai; Gregory C Gundberg; Jihee Han; Katharine Courtemanche; Michael Levin; Jessica L Whited
Journal:  Elife       Date:  2020-03-06       Impact factor: 8.140

Review 3.  Can neural signals override cellular decisions in the presence of DNA damage?

Authors:  Salvador Rojas; Néstor J Oviedo
Journal:  DNA Repair (Amst)       Date:  2021-04-20

4.  Restoration of DNA integrity and the cell cycle by electric stimulation in planarian tissues damaged by ionizing radiation.

Authors:  Devon Davidian; Melanie LeGro; Paul G Barghouth; Salvador Rojas; Benjamin Ziman; Eli Isael Maciel; David Ardell; Ariel L Escobar; Néstor J Oviedo
Journal:  J Cell Sci       Date:  2022-05-13       Impact factor: 5.235

5.  Poly(ADP-Ribose) Polymerase-3 Regulates Regeneration in Planarians.

Authors:  Paul G Barghouth; Peter Karabinis; Andie Venegas; Néstor J Oviedo
Journal:  Int J Mol Sci       Date:  2020-01-29       Impact factor: 5.923

6.  Whole planarian chromosome squash.

Authors:  Paul G Barghouth; Néstor J Oviedo
Journal:  STAR Protoc       Date:  2021-01-09

Review 7.  Alternative Animal Models of Aging Research.

Authors:  Susanne Holtze; Ekaterina Gorshkova; Stan Braude; Alessandro Cellerino; Philip Dammann; Thomas B Hildebrandt; Andreas Hoeflich; Steve Hoffmann; Philipp Koch; Eva Terzibasi Tozzini; Maxim Skulachev; Vladimir P Skulachev; Arne Sahm
Journal:  Front Mol Biosci       Date:  2021-05-17

8.  Induction of Oxidative DNA Damage in Bovine Herpesvirus 1 Infected Bovine Kidney Cells (MDBK Cells) and Human Tumor Cells (A549 Cells and U2OS Cells).

Authors:  Liqian Zhu; Xiaotian Fu; Chen Yuan; Xinyi Jiang; Gaiping Zhang
Journal:  Viruses       Date:  2018-07-26       Impact factor: 5.048

9.  Artificially altered gravity elicits cell homeostasis imbalance in planarian worms, and cerium oxide nanoparticles counteract this effect.

Authors:  Alessandra Salvetti; Andrea Degl'Innocenti; Gaetana Gambino; Jack J W A van Loon; Chiara Ippolito; Sandra Ghelardoni; Eric Ghigo; Luca Leoncino; Mirko Prato; Leonardo Rossi; Gianni Ciofani
Journal:  J Biomed Mater Res A       Date:  2021-05-07       Impact factor: 4.396

  9 in total

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