Literature DB >> 31792376

Advances in genome editing through control of DNA repair pathways.

Charles D Yeh1, Christopher D Richardson2, Jacob E Corn3.   

Abstract

Eukaryotic cells deploy overlapping repair pathways to resolve DNA damage. Advancements in genome editing take advantage of these pathways to produce permanent genetic changes. Despite recent improvements, genome editing can produce diverse outcomes that can introduce risks in clinical applications. Although homology-directed repair is attractive for its ability to encode precise edits, it is particularly difficult in human cells. Here we discuss the DNA repair pathways that underlie genome editing and strategies to favour various outcomes.

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Year:  2019        PMID: 31792376     DOI: 10.1038/s41556-019-0425-z

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  161 in total

Review 1.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

Review 2.  Mechanisms and Consequences of Double-Strand DNA Break Formation in Chromatin.

Authors:  Wendy J Cannan; David S Pederson
Journal:  J Cell Physiol       Date:  2016-01       Impact factor: 6.384

Review 3.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

Review 4.  A Life Investigating Pathways That Repair Broken Chromosomes.

Authors:  James E Haber
Journal:  Annu Rev Genet       Date:  2016-10-03       Impact factor: 16.830

Review 5.  Main steps in DNA double-strand break repair: an introduction to homologous recombination and related processes.

Authors:  Lepakshi Ranjha; Sean M Howard; Petr Cejka
Journal:  Chromosoma       Date:  2018-01-11       Impact factor: 4.316

6.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

7.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

8.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

9.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

10.  RNA-programmed genome editing in human cells.

Authors:  Martin Jinek; Alexandra East; Aaron Cheng; Steven Lin; Enbo Ma; Jennifer Doudna
Journal:  Elife       Date:  2013-01-29       Impact factor: 8.140

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  81 in total

Review 1.  BAR-Seq clonal tracking of gene-edited cells.

Authors:  Samuele Ferrari; Stefano Beretta; Aurelien Jacob; Davide Cittaro; Luisa Albano; Ivan Merelli; Luigi Naldini; Pietro Genovese
Journal:  Nat Protoc       Date:  2021-05-24       Impact factor: 13.491

2.  Attaining the promise of plant gene editing at scale.

Authors:  Ryan A Nasti; Daniel F Voytas
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-30       Impact factor: 11.205

Review 3.  CRISPR-Based Therapeutic Genome Editing: Strategies and In Vivo Delivery by AAV Vectors.

Authors:  Dan Wang; Feng Zhang; Guangping Gao
Journal:  Cell       Date:  2020-04-02       Impact factor: 41.582

Review 4.  Stem cell-based therapy for hirschsprung disease, do we have the guts to treat?

Authors:  Ali Fouad Alhawaj
Journal:  Gene Ther       Date:  2021-06-14       Impact factor: 5.250

5.  Rational Selection of CRISPR-Cas9 Guide RNAs for Homology-Directed Genome Editing.

Authors:  Kristina J Tatiossian; Robert D E Clark; Chun Huang; Matthew E Thornton; Brendan H Grubbs; Paula M Cannon
Journal:  Mol Ther       Date:  2020-10-14       Impact factor: 11.454

6.  Diversification of the CRISPR Toolbox: Applications of CRISPR-Cas Systems Beyond Genome Editing.

Authors:  Sarah Balderston; Gabrielle Clouse; Juan-José Ripoll; Grace K Pratt; Giedrius Gasiunas; Jens-Ole Bock; Eric Paul Bennett; Kiana Aran
Journal:  CRISPR J       Date:  2021-06

Review 7.  Addressing the dark matter of gene therapy: technical and ethical barriers to clinical application.

Authors:  Kateryna Kratzer; Landon J Getz; Thibaut Peterlini; Jean-Yves Masson; Graham Dellaire
Journal:  Hum Genet       Date:  2021-04-08       Impact factor: 4.132

8.  Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing.

Authors:  James K Nuñez; Jin Chen; Greg C Pommier; J Zachery Cogan; Joseph M Replogle; Carmen Adriaens; Gokul N Ramadoss; Quanming Shi; King L Hung; Avi J Samelson; Angela N Pogson; James Y S Kim; Amanda Chung; Manuel D Leonetti; Howard Y Chang; Martin Kampmann; Bradley E Bernstein; Volker Hovestadt; Luke A Gilbert; Jonathan S Weissman
Journal:  Cell       Date:  2021-04-09       Impact factor: 41.582

9.  A CRISPR Landing for Genome Rewriting at Locus-Scale.

Authors:  Nicholas W Hughes; Le Cong
Journal:  CRISPR J       Date:  2021-04

10.  Cas9 deactivation with photocleavable guide RNAs.

Authors:  Roger S Zou; Yang Liu; Bin Wu; Taekjip Ha
Journal:  Mol Cell       Date:  2021-03-03       Impact factor: 17.970

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