Literature DB >> 29083855

Repair of a Site-Specific DNA Cleavage: Old-School Lessons for Cas9-Mediated Gene Editing.

Danielle N Gallagher1, James E Haber1.   

Abstract

CRISPR/Cas9-mediated gene editing may involve nonhomologous end-joining to create various insertion/deletions (indels) or may employ homologous recombination to modify precisely the target DNA sequence. Our understanding of these processes has been guided by earlier studies using other site-specific endonucleases, both in model organisms such as budding yeast and in mammalian cells. We briefly review what has been gleaned from such studies using the HO and I-SceI endonucleases and how these findings guide current gene editing strategies.

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Year:  2017        PMID: 29083855      PMCID: PMC5835394          DOI: 10.1021/acschembio.7b00760

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  122 in total

Review 1.  Homologous recombination between heterologs during repair of a double-strand break. Suppression of translocations in normal cells.

Authors:  C Richardson; M E Moynahan; M Jasin
Journal:  Ann N Y Acad Sci       Date:  1999       Impact factor: 5.691

2.  Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

Authors:  Maya Spichal; Alice Brion; Sébastien Herbert; Axel Cournac; Martial Marbouty; Christophe Zimmer; Romain Koszul; Emmanuelle Fabre
Journal:  J Cell Sci       Date:  2016-01-13       Impact factor: 5.285

3.  Break-induced replication occurs by conservative DNA synthesis.

Authors:  Roberto A Donnianni; Lorraine S Symington
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

4.  Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae.

Authors:  Olga Tsaponina; James E Haber
Journal:  Mol Cell       Date:  2014-07-24       Impact factor: 17.970

5.  Double-strand break repair can lead to high frequencies of deletions within short CAG/CTG trinucleotide repeats.

Authors:  G F Richard; B Dujon; J E Haber
Journal:  Mol Gen Genet       Date:  1999-06

6.  A 24-base-pair DNA sequence from the MAT locus stimulates intergenic recombination in yeast.

Authors:  J A Nickoloff; E Y Chen; F Heffron
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

7.  Recovery from checkpoint-mediated arrest after repair of a double-strand break requires Srs2 helicase.

Authors:  Moreshwar B Vaze; Achille Pellicioli; Sang Eun Lee; Grzegorz Ira; Giordano Liberi; Ayelet Arbel-Eden; Marco Foiani; James E Haber
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

8.  DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1.

Authors:  Grzegorz Ira; Achille Pellicioli; Alitukiriza Balijja; Xuan Wang; Simona Fiorani; Walter Carotenuto; Giordano Liberi; Debra Bressan; Lihong Wan; Nancy M Hollingsworth; James E Haber; Marco Foiani
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

9.  Phosphorylation of Slx4 by Mec1 and Tel1 regulates the single-strand annealing mode of DNA repair in budding yeast.

Authors:  Sonja Flott; Constance Alabert; Geraldine W Toh; Rachel Toth; Neal Sugawara; David G Campbell; James E Haber; Philippe Pasero; John Rouse
Journal:  Mol Cell Biol       Date:  2007-07-16       Impact factor: 4.272

10.  The Fun30 nucleosome remodeller promotes resection of DNA double-strand break ends.

Authors:  Xuefeng Chen; Dandan Cui; Alma Papusha; Xiaotian Zhang; Chia-Dwo Chu; Jiangwu Tang; Kaifu Chen; Xuewen Pan; Grzegorz Ira
Journal:  Nature       Date:  2012-09-09       Impact factor: 49.962

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  24 in total

1.  Predicting the mutations generated by repair of Cas9-induced double-strand breaks.

Authors:  Felicity Allen; Luca Crepaldi; Clara Alsinet; Alexander J Strong; Vitalii Kleshchevnikov; Pietro De Angeli; Petra Páleníková; Anton Khodak; Vladimir Kiselev; Michael Kosicki; Andrew R Bassett; Heather Harding; Yaron Galanty; Francisco Muñoz-Martínez; Emmanouil Metzakopian; Stephen P Jackson; Leopold Parts
Journal:  Nat Biotechnol       Date:  2018-11-27       Impact factor: 54.908

Review 2.  Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae.

Authors:  Jacob S Antony; John M Hinz; John J Wyrick
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

Review 3.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

Review 4.  The unique kind of human artificial chromosome: Bypassing the requirement for repetitive centromere DNA.

Authors:  Craig W Gambogi; Jennine M Dawicki-McKenna; Glennis A Logsdon; Ben E Black
Journal:  Exp Cell Res       Date:  2020-04-01       Impact factor: 3.905

5.  Correction of Three Prominent Mutations in Mouse and Human Models of Duchenne Muscular Dystrophy by Single-Cut Genome Editing.

Authors:  Yi-Li Min; Francesco Chemello; Hui Li; Cristina Rodriguez-Caycedo; Efrain Sanchez-Ortiz; Alex A Mireault; John R McAnally; John M Shelton; Yu Zhang; Rhonda Bassel-Duby; Eric N Olson
Journal:  Mol Ther       Date:  2020-05-30       Impact factor: 11.454

Review 6.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

Review 7.  Designing Safer CRISPR/Cas9 Therapeutics for HIV: Defining Factors That Regulate and Technologies Used to Detect Off-Target Editing.

Authors:  Neil T Sullivan; Alexander G Allen; Andrew J Atkins; Cheng-Han Chung; Will Dampier; Michael R Nonnemacher; Brian Wigdahl
Journal:  Front Microbiol       Date:  2020-08-12       Impact factor: 5.640

Review 8.  Spatiotemporal control of CRISPR/Cas9 gene editing.

Authors:  Chenya Zhuo; Jiabin Zhang; Jung-Hwan Lee; Ju Jiao; Du Cheng; Li Liu; Hae-Won Kim; Yu Tao; Mingqiang Li
Journal:  Signal Transduct Target Ther       Date:  2021-06-20

9.  Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing.

Authors:  Tao Guo; Yi-Li Feng; Jing-Jing Xiao; Qian Liu; Xiu-Na Sun; Ji-Feng Xiang; Na Kong; Si-Cheng Liu; Guo-Qiao Chen; Yue Wang; Meng-Meng Dong; Zhen Cai; Hui Lin; Xiu-Jun Cai; An-Yong Xie
Journal:  Genome Biol       Date:  2018-10-19       Impact factor: 13.583

Review 10.  CRISPR-Cas immunity, DNA repair and genome stability.

Authors:  Andrew Cubbon; Ivana Ivancic-Bace; Edward L Bolt
Journal:  Biosci Rep       Date:  2018-09-20       Impact factor: 3.840

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