Literature DB >> 27723193

Absolute Minimal Sampling in High-Dimensional NMR Spectroscopy.

Alexandar L Hansen1, Rafael Brüschweiler2,3,4.   

Abstract

Standard three-dimensional Fourier transform (FT) NMR experiments of molecular systems often involve prolonged measurement times due to extensive sampling required along the indirect time domains to obtain adequate spectral resolution. In recent years, a wealth of alternative sampling methods has been proposed to ease this bottleneck. However, due to their algorithmic complexity, for a given sample and experiment it is often hard to determine the minimal sampling requirement, and hence the maximal achievable experimental speed up. Herein we introduce an absolute minimal sampling (AMS) method that can be applied to common 3D NMR experiments. We show for the proteins ubiquitin and arginine kinase that for widely used experiments, such as 3D HNCO, accurate carbon frequencies can be obtained with a single time increment, while for others, such as 3D HN(CA)CO, all relevant information is obtained with as few as 6 increments amounting to a speed up of a factor 7-50.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; minimal sampling; non-linear least-squares time-domain fitting; protein structures

Mesh:

Substances:

Year:  2016        PMID: 27723193      PMCID: PMC5663440          DOI: 10.1002/anie.201608048

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  12 in total

1.  Regularization of the two-dimensional filter diagonalization method: FDM2K

Authors: 
Journal:  J Magn Reson       Date:  2000-10       Impact factor: 2.229

2.  GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

3.  Projection-reconstruction of three-dimensional NMR spectra.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

4.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

5.  Non-uniform sampling: post-Fourier era of NMR data collection and processing.

Authors:  Krzysztof Kazimierczuk; Vladislav Orekhov
Journal:  Magn Reson Chem       Date:  2015-08-20       Impact factor: 2.447

6.  CRAFT (complete reduction to amplitude frequency table)--robust and time-efficient Bayesian approach for quantitative mixture analysis by NMR.

Authors:  Krish Krishnamurthy
Journal:  Magn Reson Chem       Date:  2013-10-24       Impact factor: 2.447

7.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

8.  Fast multi-dimensional NMR acquisition and processing using the sparse FFT.

Authors:  Haitham Hassanieh; Maxim Mayzel; Lixin Shi; Dina Katabi; Vladislav Yu Orekhov
Journal:  J Biomol NMR       Date:  2015-06-30       Impact factor: 2.835

9.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

10.  Deconvolution of two-dimensional NMR spectra by fast maximum likelihood reconstruction: application to quantitative metabolomics.

Authors:  Roger A Chylla; Kaifeng Hu; James J Ellinger; John L Markley
Journal:  Anal Chem       Date:  2011-05-26       Impact factor: 6.986

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  5 in total

1.  Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time.

Authors:  Gregory Jameson; Alexandar L Hansen; Dawei Li; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2019-10-14       Impact factor: 15.419

2.  Monitoring 15N Chemical Shifts During Protein Folding by Pressure-Jump NMR.

Authors:  Cyril Charlier; Joseph M Courtney; T Reid Alderson; Philip Anfinrud; Ad Bax
Journal:  J Am Chem Soc       Date:  2018-06-25       Impact factor: 15.419

Review 3.  Non-Uniform and Absolute Minimal Sampling for High-Throughput Multidimensional NMR Applications.

Authors:  Dawei Li; Alexandar L Hansen; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Chemistry       Date:  2018-06-19       Impact factor: 5.236

4.  Absolute Minimal Sampling of Homonuclear 2D NMR TOCSY Spectra for High-Throughput Applications of Complex Mixtures.

Authors:  Alexandar L Hansen; Dawei Li; Cheng Wang; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-13       Impact factor: 15.336

5.  Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra.

Authors:  Da-Wei Li; Alexandar L Hansen; Lei Bruschweiler-Li; Chunhua Yuan; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2022-04-07       Impact factor: 2.582

  5 in total

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