Literature DB >> 29566285

Non-Uniform and Absolute Minimal Sampling for High-Throughput Multidimensional NMR Applications.

Dawei Li1, Alexandar L Hansen1, Lei Bruschweiler-Li1, Rafael Brüschweiler1,2,3.   

Abstract

Many biomolecular NMR applications can benefit from the faster acquisition of multidimensional NMR data with high resolution and their automated analysis and interpretation. In recent years, a number of non-uniform sampling (NUS) approaches have been introduced for the reconstruction of multidimensional NMR spectra, such as compressed sensing, thereby bypassing traditional Fourier-transform processing. Such approaches are applicable to both biomacromolecules and small molecules and their complex mixtures and can be combined with homonuclear decoupling (pure shift) and covariance processing. For homonuclear 2D TOCSY experiments, absolute minimal sampling (AMS) permits the drastic shortening of measurement times necessary for high-throughput applications for identification and quantification of components in complex biological mixtures in the field of metabolomics. Such TOCSY spectra can be comprehensively represented by graphic theoretical maximal cliques for the identification of entire spin systems and their subsequent query against NMR databases. Integration of these methods in webservers permits the rapid and reliable identification of mixture components. Recent progress is reviewed in this Minireview.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR experiments; automated spectral analysis; biomolecular; metabolomics; nuclear magnetic resonance

Year:  2018        PMID: 29566285      PMCID: PMC6488043          DOI: 10.1002/chem.201800954

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  62 in total

1.  Covariance nuclear magnetic resonance spectroscopy.

Authors:  Rafael Brüschweiler; Fengli Zhang
Journal:  J Chem Phys       Date:  2004-03-15       Impact factor: 3.488

2.  Covariance NMR spectroscopy by singular value decomposition.

Authors:  Nikola Trbovic; Serge Smirnov; Fengli Zhang; Rafael Brüschweiler
Journal:  J Magn Reson       Date:  2004-12       Impact factor: 2.229

3.  NMR data processing using iterative thresholding and minimum l(1)-norm reconstruction.

Authors:  Alan S Stern; David L Donoho; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2007-08-03       Impact factor: 2.229

4.  Assignment of protein NMR spectra in the light of homonuclear 3D spectroscopy: an automatable procedure based on 3D TOCSY-TOCSY and 3D TOCSY-NOESY.

Authors:  H Oschkinat; T A Holak; C Cieslar
Journal:  Biopolymers       Date:  1991-05       Impact factor: 2.505

5.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

6.  HMBC-1,1-ADEQUATE via generalized indirect covariance: a high sensitivity alternative to n,1-ADEQUATE.

Authors:  Gary E Martin; R Thomas Williamson; Kirill A Blinov; Clemens G Anklin; Wolfgang Bermel
Journal:  Magn Reson Chem       Date:  2012-08-28       Impact factor: 2.447

7.  Exploring the use of Generalized Indirect Covariance to reconstruct pure shift NMR spectra: Current Pros and Cons.

Authors:  André Fredi; Pau Nolis; Carlos Cobas; Gary E Martin; Teodor Parella
Journal:  J Magn Reson       Date:  2016-03-10       Impact factor: 2.229

8.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

9.  A new approach to compressed sensing for NMR.

Authors:  Alan S Stern; Jeffrey C Hoch
Journal:  Magn Reson Chem       Date:  2015-08-10       Impact factor: 2.447

10.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

View more
  3 in total

Review 1.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

2.  Real-Time Pure Shift HSQC NMR for Untargeted Metabolomics.

Authors:  István Timári; Cheng Wang; Alexandar L Hansen; Gilson Costa Dos Santos; Sung Ok Yoon; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-01-16       Impact factor: 6.986

3.  Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra.

Authors:  Da-Wei Li; Alexandar L Hansen; Lei Bruschweiler-Li; Chunhua Yuan; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2022-04-07       Impact factor: 2.582

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.