Literature DB >> 26123316

Fast multi-dimensional NMR acquisition and processing using the sparse FFT.

Haitham Hassanieh1, Maxim Mayzel2, Lixin Shi1, Dina Katabi1, Vladislav Yu Orekhov3.   

Abstract

Increasing the dimensionality of NMR experiments strongly enhances the spectral resolution and provides invaluable direct information about atomic interactions. However, the price tag is high: long measurement times and heavy requirements on the computation power and data storage. We introduce sparse fast Fourier transform as a new method of NMR signal collection and processing, which is capable of reconstructing high quality spectra of large size and dimensionality with short measurement times, faster computations than the fast Fourier transform, and minimal storage for processing and handling of sparse spectra. The new algorithm is described and demonstrated for a 4D BEST-HNCOCA spectrum.

Keywords:  Compressed sensing; Fast NMR; Non uniform sampling; Reduced dimensionality

Mesh:

Substances:

Year:  2015        PMID: 26123316     DOI: 10.1007/s10858-015-9952-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

3.  Non-uniform frequency domain for optimal exploitation of non-uniform sampling.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  J Magn Reson       Date:  2010-05-25       Impact factor: 2.229

4.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

5.  Spectral reconstruction methods in fast NMR: reduced dimensionality, random sampling and maximum entropy.

Authors:  Mehdi Mobli; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2006-07-11       Impact factor: 2.229

6.  Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR spectroscopy.

Authors:  Sebastian Hiller; Christian Wasmer; Gerhard Wider; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2007-08-11       Impact factor: 15.419

7.  Preface: Fast NMR methods are here to stay.

Authors:  Martin Billeter; Vladislav Orekhov
Journal:  Top Curr Chem       Date:  2012

8.  Analysis of non-uniformly sampled spectra with multi-dimensional decomposition.

Authors:  Vladislav Yu Orekhov; Victor A Jaravine
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-02-24       Impact factor: 9.795

9.  Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data.

Authors:  R A Chylla; J L Markley
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

10.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

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  4 in total

1.  Absolute Minimal Sampling in High-Dimensional NMR Spectroscopy.

Authors:  Alexandar L Hansen; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

2.  Reconstruction of non-uniformly sampled five-dimensional NMR spectra by signal separation algorithm.

Authors:  Krzysztof Kosiński; Jan Stanek; Michał J Górka; Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2017-02-28       Impact factor: 2.835

3.  XLSY: Extra-Large NMR Spectroscopy.

Authors:  Yulia Pustovalova; Maxim Mayzel; Vladislav Yu Orekhov
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-01       Impact factor: 15.336

4.  Linear discriminant analysis reveals hidden patterns in NMR chemical shifts of intrinsically disordered proteins.

Authors:  Javier A Romero; Paulina Putko; Mateusz Urbańczyk; Krzysztof Kazimierczuk; Anna Zawadzka-Kazimierczuk
Journal:  PLoS Comput Biol       Date:  2022-10-06       Impact factor: 4.779

  4 in total

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