Literature DB >> 26290057

Non-uniform sampling: post-Fourier era of NMR data collection and processing.

Krzysztof Kazimierczuk1, Vladislav Orekhov2.   

Abstract

The invention of multidimensional techniques in the 1970s revolutionized NMR, making it the general tool of structural analysis of molecules and materials. In the most straightforward approach, the signal sampling in the indirect dimensions of a multidimensional experiment is performed in the same manner as in the direct dimension, i.e. with a grid of equally spaced points. This results in lengthy experiments with a resolution often far from optimum. To circumvent this problem, numerous sparse-sampling techniques have been developed in the last three decades, including two traditionally distinct approaches: the radial sampling and non-uniform sampling. This mini review discusses the sparse signal sampling and reconstruction techniques from the point of view of an underdetermined linear algebra problem that arises when a full, equally spaced set of sampled points is replaced with sparse sampling. Additional assumptions that are introduced to solve the problem, as well as the shape of the undersampled Fourier transform operator (visualized as so-called point spread function), are shown to be the main differences between various sparse-sampling methods.
Copyright © 2015 John Wiley & Sons, Ltd.

Keywords:  compressed sensing; maximum entropy; multidimensional NMR; non-uniform sampling; projection reconstruction

Year:  2015        PMID: 26290057     DOI: 10.1002/mrc.4284

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  26 in total

1.  Non-Uniform Sampling in NMR Spectroscopy and the Preservation of Spectral Knowledge in the Time and Frequency Domains.

Authors:  Manpreet Kaur; Callie M Lewis; Aaron Chronister; Gabriel S Phun; Leonard J Mueller
Journal:  J Phys Chem A       Date:  2020-06-18       Impact factor: 2.781

2.  Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time.

Authors:  Gregory Jameson; Alexandar L Hansen; Dawei Li; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2019-10-14       Impact factor: 15.419

Review 3.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

4.  Absolute Minimal Sampling of Homonuclear 2D NMR TOCSY Spectra for High-Throughput Applications of Complex Mixtures.

Authors:  Alexandar L Hansen; Dawei Li; Cheng Wang; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-13       Impact factor: 15.336

5.  Beyond Fourier.

Authors:  Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2017-03-27       Impact factor: 2.229

6.  Accurate Identification of Unknown and Known Metabolic Mixture Components by Combining 3D NMR with Fourier Transform Ion Cyclotron Resonance Tandem Mass Spectrometry.

Authors:  Cheng Wang; Lidong He; Da-Wei Li; Lei Bruschweiler-Li; Alan G Marshall; Rafael Brüschweiler
Journal:  J Proteome Res       Date:  2017-09-01       Impact factor: 4.466

7.  Absolute Minimal Sampling in High-Dimensional NMR Spectroscopy.

Authors:  Alexandar L Hansen; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

8.  A 300-fold enhancement of imino nucleic acid resonances by hyperpolarized water provides a new window for probing RNA refolding by 1D and 2D NMR.

Authors:  Mihajlo Novakovic; Gregory L Olsen; György Pintér; Daniel Hymon; Boris Fürtig; Harald Schwalbe; Lucio Frydman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-16       Impact factor: 11.205

Review 9.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

10.  Purification of native CCL7 and its functional interaction with selected chemokine receptors.

Authors:  Marina V Goncharuk; Debarati Roy; Maxim A Dubinnyi; Kirill D Nadezhdin; Ashish Srivastava; Mithu Baidya; Hemlata Dwivedi-Agnihotri; Alexander S Arseniev; Arun K Shukla
Journal:  Protein Expr Purif       Date:  2020-03-05       Impact factor: 1.650

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