Literature DB >> 27545569

A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.

Yufan Wu1, Steven G Boxer1.   

Abstract

The vibrational Stark effect (VSE) has been used to measure the electric field in the active site of ketosteroid isomerase (KSI). These measured fields correlate with ΔG(⧧) in a series of conventional mutants, yielding an estimate for the electrostatic contribution to catalysis (Fried et al. Science 2014, 346, 1510-1513). In this work we test this result with much more conservative variants in which individual Tyr residues in the active site are replaced by 3-chlorotyrosine via amber suppression. The electric fields sensed at the position of the carbonyl bond involved in charge displacement during catalysis were characterized using the VSE, where the field sensitivity has been calibrated by vibrational Stark spectroscopy, solvatochromism, and MD simulations. A linear relationship is observed between the electric field and ΔG(⧧) that interpolates between wild-type and more drastic conventional mutations, reinforcing the evaluation of the electrostatic contribution to catalysis in KSI. A simplified model and calculation are developed to estimate changes in the electric field accompanying changes in the extended hydrogen-bond network in the active site. The results are consistent with a model in which the O-H group of a key active site tyrosine functions by imposing a static electrostatic potential onto the carbonyl bond. The model suggests that the contribution to catalysis from the active site hydrogen bonds is of similar weight to the distal interactions from the rest of the protein. A similar linear correlation was also observed between the proton affinity of KSI's active site and the catalytic rate, suggesting a direct connection between the strength of the H-bond and the electric field it exerts.

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Year:  2016        PMID: 27545569      PMCID: PMC5063566          DOI: 10.1021/jacs.6b06843

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

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Authors:  Ralph M Pollack
Journal:  Bioorg Chem       Date:  2004-10       Impact factor: 5.275

Review 2.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 3.  Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites.

Authors:  A Warshel
Journal:  J Biol Chem       Date:  1998-10-16       Impact factor: 5.157

4.  Quantum delocalization of protons in the hydrogen-bond network of an enzyme active site.

Authors:  Lu Wang; Stephen D Fried; Steven G Boxer; Thomas E Markland
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-12       Impact factor: 11.205

5.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

6.  Identification of active site residues by site-directed mutagenesis of delta 5-3-ketosteroid isomerase from Pseudomonas putida biotype B.

Authors:  S W Kim; K Y Choi
Journal:  J Bacteriol       Date:  1995-05       Impact factor: 3.490

7.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

8.  A solvatochromic model calibrates nitriles' vibrational frequencies to electrostatic fields.

Authors:  Sayan Bagchi; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2012-06-15       Impact factor: 15.419

9.  Evaluation of the internal equilibrium constant for 3-oxo-delta 5-steroid isomerase using the D38E and D38N mutants: the energetic basis for catalysis.

Authors:  D C Hawkinson; R M Pollack; N P Ambulos
Journal:  Biochemistry       Date:  1994-10-11       Impact factor: 3.162

10.  Experimental and computational mutagenesis to investigate the positioning of a general base within an enzyme active site.

Authors:  Jason P Schwans; Philip Hanoian; Benjamin J Lengerich; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Sharon Hammes-Schiffer; Daniel Herschlag
Journal:  Biochemistry       Date:  2014-04-09       Impact factor: 3.162

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  21 in total

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Authors:  Benjamin Thomson; Johan Both; Yufan Wu; Robert M Parrish; Todd J Martínez; Steven G Boxer
Journal:  J Phys Chem B       Date:  2019-05-31       Impact factor: 2.991

3.  Enantioselective Catalysis of an Anionic Oxy-Cope Rearrangement Enabled by Synergistic Ion Binding.

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5.  Electric Fields and Fast Protein Dynamics in Enzymes.

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Journal:  J Phys Chem Lett       Date:  2017-12-11       Impact factor: 6.475

Review 6.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

7.  Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Authors:  Samuel H Schneider; Huong T Kratochvil; Martin T Zanni; Steven G Boxer
Journal:  J Phys Chem B       Date:  2017-03-08       Impact factor: 2.991

8.  Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.

Authors:  Samuel H Schneider; Steven G Boxer
Journal:  J Phys Chem B       Date:  2016-08-31       Impact factor: 2.991

9.  A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.

Authors:  Yufan Wu; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2020-05-19       Impact factor: 15.419

10.  Testing the Limitations of MD-Based Local Electric Fields Using the Vibrational Stark Effect in Solution: Penicillin G as a Test Case.

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Journal:  J Phys Chem B       Date:  2021-04-26       Impact factor: 2.991

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