Literature DB >> 25799082

Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Stephen D Fried1, Steven G Boxer1.   

Abstract

Over the past decade, we have developed a spectroscopic approach to measure electric fields inside matter with high spatial (<1 Å) and field (<1 MV/cm) resolution. The approach hinges on exploiting a physical phenomenon known as the vibrational Stark effect (VSE), which ultimately provides a direct mapping between observed vibrational frequencies and electric fields. Therefore, the frequency of a vibrational probe encodes information about the local electric field in the vicinity around the probe. The VSE method has enabled us to understand in great detail the underlying physical nature of several important biomolecular phenomena, such as drug-receptor selectivity in tyrosine kinases, catalysis by the enzyme ketosteroid isomerase, and unidirectional electron transfer in the photosynthetic reaction center. Beyond these specific examples, the VSE has provided a conceptual foundation for how to model intermolecular (noncovalent) interactions in a quantitative, consistent, and general manner. The starting point for research in this area is to choose (or design) a vibrational probe to interrogate the particular system of interest. Vibrational probes are sometimes intrinsic to the system in question, but we have also devised ways to build them into the system (extrinsic probes), often with minimal perturbation. With modern instruments, vibrational frequencies can increasingly be recorded with very high spatial, temporal, and frequency resolution, affording electric field maps correspondingly resolved in space, time, and field magnitude. In this Account, we set out to explain the VSE in broad strokes to make its relevance accessible to chemists of all specialties. Our intention is not to provide an encyclopedic review of published work but rather to motivate the underlying framework of the methodology and to describe how we make and interpret the measurements. Using certain vibrational probes, benchmarked against computer models, it is possible to use the VSE to measure absolute electric fields in arbitrary environments. The VSE approach provides an organizing framework for thinking generally about intermolecular interactions in a quantitative way and may serve as a useful conceptual tool for molecular design.

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Year:  2015        PMID: 25799082      PMCID: PMC4667952          DOI: 10.1021/ar500464j

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  28 in total

1.  Vibrational solvatochromism and electrochromism of infrared probe molecules containing C≡O, C≡N, C=O, or C-F vibrational chromophore.

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2.  Good practices in free-energy calculations.

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3.  Reticular chemistry: occurrence and taxonomy of nets and grammar for the design of frameworks.

Authors:  Nathan W Ockwig; Olaf Delgado-Friedrichs; Michael O'Keeffe; Omar M Yaghi
Journal:  Acc Chem Res       Date:  2005-03       Impact factor: 22.384

4.  Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?

Authors:  Paul A Sigala; Aaron T Fafarman; Patrick E Bogard; Steven G Boxer; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-09-14       Impact factor: 15.419

Review 5.  Stark spectroscopy: applications in chemistry, biology, and materials science.

Authors:  G U Bublitz; S G Boxer
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

6.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

7.  A test of the role of electrostatic interactions in determining the CO stretch frequency in carbonmonoxymyoglobin.

Authors:  S M Decatur; S G Boxer
Journal:  Biochem Biophys Res Commun       Date:  1995-07-06       Impact factor: 3.575

8.  Dynamics of enzymatic reactions.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1984-01       Impact factor: 11.205

9.  Calculation of the Vibrational Stark Effect Using a First-Principles QM/MM Approach.

Authors:  Ashley L Ringer; Alexander D Mackerell
Journal:  J Phys Chem Lett       Date:  2011-02-21       Impact factor: 6.475

10.  A solvatochromic model calibrates nitriles' vibrational frequencies to electrostatic fields.

Authors:  Sayan Bagchi; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2012-06-15       Impact factor: 15.419

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  63 in total

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Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.

Authors:  James P Hall; Fergus E Poynton; Páraic M Keane; Sarah P Gurung; John A Brazier; David J Cardin; Graeme Winter; Thorfinnur Gunnlaugsson; Igor V Sazanovich; Michael Towrie; Christine J Cardin; John M Kelly; Susan J Quinn
Journal:  Nat Chem       Date:  2015-10-19       Impact factor: 24.427

3.  BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Science       Date:  2015-08-27       Impact factor: 47.728

4.  Measuring electronic structure properties of flavins and flavoproteins by electronic Stark spectroscopy.

Authors:  Robert J Stanley; Cornelius J van Galen
Journal:  Methods Enzymol       Date:  2019-04-27       Impact factor: 1.600

5.  Oriented electric fields as future smart reagents in chemistry.

Authors:  Sason Shaik; Debasish Mandal; Rajeev Ramanan
Journal:  Nat Chem       Date:  2016-11-22       Impact factor: 24.427

6.  Detection of electron tunneling across plasmonic nanoparticle-film junctions using nitrile vibrations.

Authors:  Hao Wang; Kun Yao; John A Parkhill; Zachary D Schultz
Journal:  Phys Chem Chem Phys       Date:  2017-02-22       Impact factor: 3.676

7.  Ionizable Nitroxides for Studying Local Electrostatic Properties of Lipid Bilayers and Protein Systems by EPR.

Authors:  Maxim A Voinov; Alex I Smirnov
Journal:  Methods Enzymol       Date:  2015-09-09       Impact factor: 1.600

8.  Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules.

Authors:  Rui-Jie Xue; Adam Grofe; He Yin; Zexing Qu; Jiali Gao; Hui Li
Journal:  J Chem Theory Comput       Date:  2016-12-07       Impact factor: 6.006

Review 9.  Live-Cell Bioorthogonal Chemical Imaging: Stimulated Raman Scattering Microscopy of Vibrational Probes.

Authors:  Lu Wei; Fanghao Hu; Zhixing Chen; Yihui Shen; Luyuan Zhang; Wei Min
Journal:  Acc Chem Res       Date:  2016-08-03       Impact factor: 22.384

10.  Enhanced vibrational solvatochromism and spectral diffusion by electron rich substituents on small molecule silanes.

Authors:  Courtney M Olson; Adam Grofe; Christopher J Huber; Ivan C Spector; Jiali Gao; Aaron M Massari
Journal:  J Chem Phys       Date:  2017-09-28       Impact factor: 3.488

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