Literature DB >> 7918439

Evaluation of the internal equilibrium constant for 3-oxo-delta 5-steroid isomerase using the D38E and D38N mutants: the energetic basis for catalysis.

D C Hawkinson1, R M Pollack, N P Ambulos.   

Abstract

The dissociation constant (KD) for the complex of the intermediate dienol (2) and the D38N mutant of 3-oxo-delta 5-steroid isomerase (D38N.2) has been determined for the isomerization of 5-androstene-3,17-dione (1). KD for D38N.2 is pH-dependent, with values of 6 nM at pH 6.9, 51 nM at pH 5.8, and 59 nM at pH 5.2. These values of KD are used to estimate the pH-independent dissociation constant (0.7 +/- 0.3 microM) for the complex of dienol and wild-type (WT) enzyme. The internal equilibrium constant (Kint = 0.3 +/- 0.2) for the interconversion of bound substrate (WT.1) and bound intermediate (WT.2) was then calculated for WT using its KD, the values for the external equilibrium constant for 1<-->2, and the dissociation constant of the enzyme substrate complex (KS). The dissociation constant (KD) for the complex of equilenin (4) with WT, D38E, and D38N enzymes was also determined at pH values from 4 to 7. For the complex of 4 with D38N (D38N.4), KD is pH-dependent with an apparent pKa of about 4.5, whereas KD for both WT.4 and D38E.4 is pH-independent. These values are used to give two additional estimates of the internal equilibrium constant for WT (Kint = 0.5 and 0.01). Analysis of these results in terms of Marcus formalism leads to the conclusion that the primary function of the enzyme is to decrease the thermodynamic barrier to formation of the intermediate by lowering delta Gzero by about 10 kcal/mol. In contrast, the intrinsic free energy of activation (delta G++int) is only decreased by about 3 kcal/mol. These results are discussed in terms of competing theories of enzymatic enolization.

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Year:  1994        PMID: 7918439     DOI: 10.1021/bi00206a021

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Roles of dimerization in folding and stability of ketosteroid isomerase from Pseudomonas putida biotype B.

Authors:  D H Kim; G H Nam; D S Jang; S Yun; G Choi; H C Lee; K Y Choi
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

2.  Impact of mutation on proton transfer reactions in ketosteroid isomerase: insights from molecular dynamics simulations.

Authors:  Dhruva K Chakravorty; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

3.  Evaluation of the energetics of the concerted acid-base mechanism in enzymatic catalysis: the case of ketosteroid isomerase.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  J Phys Chem B       Date:  2011-12-28       Impact factor: 2.991

4.  Thermodynamic framework for identifying free energy inventories of enzyme catalytic cycles.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

5.  Kemp Eliminase Activity of Ketosteroid Isomerase.

Authors:  Vandana Lamba; Enis Sanchez; Lauren Rose Fanning; Kathryn Howe; Maria Alejandra Alvarez; Daniel Herschlag; Marcello Forconi
Journal:  Biochemistry       Date:  2017-01-20       Impact factor: 3.162

6.  Ketosteroid isomerase provides further support for the idea that enzymes work by electrostatic preorganization.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Zhen T Chu; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-11       Impact factor: 11.205

7.  The isomerization of Δ5-androstene-3,17-dione by the human glutathione transferase A3-3 proceeds via a conjugated heteroannular diene intermediate.

Authors:  Jonathan L Daka; Ikechukwu Achilonu; Heini W Dirr
Journal:  J Biol Chem       Date:  2014-09-23       Impact factor: 5.157

8.  Asymmetric olefin isomerization of butenolides via proton transfer catalysis by an organic molecule.

Authors:  Yongwei Wu; Ravi P Singh; Li Deng
Journal:  J Am Chem Soc       Date:  2011-07-22       Impact factor: 15.419

9.  Proton affinity of the oxyanion hole in the active site of ketosteroid isomerase.

Authors:  William Childs; Steven G Boxer
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

10.  The conserved cis-Pro39 residue plays a crucial role in the proper positioning of the catalytic base Asp38 in ketosteroid isomerase from Comamonas testosteroni.

Authors:  Gyu Hyun Nam; Sun-Shin Cha; Young Sung Yun; Yun Hee Oh; Bee Hak Hong; Heung-Soo Lee; Kwan Yong Choi
Journal:  Biochem J       Date:  2003-10-15       Impact factor: 3.857

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