Literature DB >> 32378409

A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.

Yufan Wu1, Stephen D Fried1, Steven G Boxer1.   

Abstract

Electrostatic interactions play a pivotal role in enzymatic catalysis and are increasingly modeled explicitly in computational enzyme design; nevertheless, they are challenging to measure experimentally. Using vibrational Stark effect (VSE) spectroscopy, we have measured electric fields inside the active site of the enzyme ketosteroid isomerase (KSI). These studies have shown that these fields can be unusually large, but it has been unclear to what extent they specifically stabilize the transition state (TS) relative to a ground state (GS). In the following, we use crystallography and computational modeling to show that KSI's intrinsic electric field is nearly perfectly oriented to stabilize the geometry of its reaction's TS. Moreover, we find that this electric field adjusts the orientation of its substrate in the ground state so that the substrate needs to only undergo minimal structural changes upon activation to its TS. This work provides evidence that the active site electric field in KSI is preorganized to facilitate catalysis and provides a template for how electrostatic preorganization can be measured in enzymatic systems.

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Year:  2020        PMID: 32378409      PMCID: PMC7474534          DOI: 10.1021/jacs.0c00383

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

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4.  Interaction vs Preorganization in Enzyme Catalysis. A Dispute That Calls for Resolution.

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Journal:  ACS Chem Biol       Date:  2019-06-19       Impact factor: 5.100

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8.  Electric Fields and Fast Protein Dynamics in Enzymes.

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Review 9.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

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Authors:  Philip Hanoian; C Tony Liu; Sharon Hammes-Schiffer; Stephen Benkovic
Journal:  Acc Chem Res       Date:  2015-01-07       Impact factor: 22.384

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  11 in total

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Authors:  Marcelo D Polêto; Justin A Lemkul
Journal:  Commun Chem       Date:  2022-03-18

2.  Electric Fields in Catalysis: From Enzymes to Molecular Catalysts.

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Journal:  ACS Catal       Date:  2021-08-18       Impact factor: 13.700

3.  Key difference between transition state stabilization and ground state destabilization: increasing atomic charge densities before or during enzyme-substrate binding.

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4.  TUPÃ: Electric field analyses for molecular simulations.

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Review 5.  Advances in optimizing enzyme electrostatic preorganization.

Authors:  Matthew R Hennefarth; Anastassia N Alexandrova
Journal:  Curr Opin Struct Biol       Date:  2021-07-17       Impact factor: 6.809

6.  Inverse heavy enzyme isotope effects in methylthioadenosine nucleosidases.

Authors:  Morais Brown; Ioanna Zoi; Dimitri Antoniou; Hilda A Namanja-Magliano; Steven D Schwartz; Vern L Schramm
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7.  Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.

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8.  Quantification of Local Electric Field Changes at the Active Site of Cytochrome c Oxidase by Fourier Transform Infrared Spectroelectrochemical Titrations.

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9.  The Interplay of Electrostatics and Chemical Positioning in the Evolution of Antibiotic Resistance in TEM β-Lactamases.

Authors:  Samuel H Schneider; Jacek Kozuch; Steven G Boxer
Journal:  ACS Cent Sci       Date:  2021-11-22       Impact factor: 14.553

10.  Catalytic Mechanism of Aromatic Nitration by Cytochrome P450 TxtE: Involvement of a Ferric-Peroxynitrite Intermediate.

Authors:  Savvas Louka; Sarah M Barry; Derren J Heyes; M Qadri E Mubarak; Hafiz Saqib Ali; Lona M Alkhalaf; Andrew W Munro; Nigel S Scrutton; Gregory L Challis; Sam P de Visser
Journal:  J Am Chem Soc       Date:  2020-09-02       Impact factor: 15.419

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