Literature DB >> 28225620

Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Samuel H Schneider1, Huong T Kratochvil2, Martin T Zanni2, Steven G Boxer1.   

Abstract

The physical origins of vibrational frequency shifts have been extensively studied in order to understand noncovalent intermolecular interactions in the condensed phase. In the case of carbonyls, vibrational solvatochromism, MD simulations, and vibrational Stark spectroscopy suggest that the frequency shifts observed in simple solvents arise predominately from the environment's electric field due to the vibrational Stark effect. This is contrary to many previously invoked descriptions of vibrational frequency shifts, such as bond polarization, whereby the bond's force constant and/or partial nuclear charges are altered due to the environment, often illustrated in terms of favored resonance structures. Here we test these hypotheses using vibrational solvatochromism as measured using 2D IR to assess the solvent dependence of the bond anharmonicity. These results indicate that the carbonyl bond's anharmonicity is independent of solvent as tested using hexanes, DMSO, and D2O and is supported by simulated 2D spectra. In support of the linear vibrational Stark effect, these 2D IR measurements are consistent with the assertion that the Stark tuning rate is unperturbed by the electric field generated by both hydrogen and non-hydrogen bonding environments and further extends the general applicability of carbonyl probes for studying intermolecular interactions.

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Year:  2017        PMID: 28225620      PMCID: PMC5453717          DOI: 10.1021/acs.jpcb.7b00537

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  43 in total

1.  Vibrational solvatochromism. III. Rigorous treatment of the dispersion interaction contribution.

Authors:  Bartosz Błasiak; Minhaeng Cho
Journal:  J Chem Phys       Date:  2015-10-28       Impact factor: 3.488

2.  A transferable electrostatic map for solvation effects on amide I vibrations and its application to linear and two-dimensional spectroscopy.

Authors:  Thomas la Cour Jansen; Jasper Knoester
Journal:  J Chem Phys       Date:  2006-01-28       Impact factor: 3.488

3.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

4.  Amide I vibrational dynamics of N-methylacetamide in polar solvents: the role of electrostatic interactions.

Authors:  M F DeCamp; L DeFlores; J M McCracken; A Tokmakoff; K Kwac; M Cho
Journal:  J Phys Chem B       Date:  2005-06-02       Impact factor: 2.991

5.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

Review 6.  How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping.

Authors:  Sang-Hee Shim; Martin T Zanni
Journal:  Phys Chem Chem Phys       Date:  2008-12-10       Impact factor: 3.676

7.  Combined IR/NIR and density functional theory calculations analysis of the solvent effects on frequencies and intensities of the fundamental and overtones of the C ═ O stretching vibrations of acetone and 2-hexanone.

Authors:  Yujing Chen; Yusuke Morisawa; Yoshisuke Futami; Mirosław A Czarnecki; Hai-Shui Wang; Yukihiro Ozaki
Journal:  J Phys Chem A       Date:  2014-04-01       Impact factor: 2.781

Review 8.  Computational Amide I 2D IR Spectroscopy as a Probe of Protein Structure and Dynamics.

Authors:  Mike Reppert; Andrei Tokmakoff
Journal:  Annu Rev Phys Chem       Date:  2016-03-31       Impact factor: 12.703

9.  Solvent-induced O-H vibration red-shifts of oxygen-acids in hydrogen-bonded O-H···base complexes.

Authors:  Sharon Keinan; Dina Pines; Philip M Kiefer; James T Hynes; Ehud Pines
Journal:  J Phys Chem B       Date:  2014-07-15       Impact factor: 2.991

10.  Empirical maps for the calculation of amide I vibrational spectra of proteins from classical molecular dynamics simulations.

Authors:  Edyta Małolepsza; John E Straub
Journal:  J Phys Chem B       Date:  2014-04-11       Impact factor: 2.991

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  8 in total

1.  Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.

Authors:  Chi-Yun Lin; Matthew G Romei; Luke M Oltrogge; Irimpan I Mathews; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2019-09-11       Impact factor: 15.419

Review 2.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

3.  Biosynthetic Incorporation of Site-Specific Isotopes in β-Lactam Antibiotics Enables Biophysical Studies.

Authors:  Jacek Kozuch; Samuel H Schneider; Steven G Boxer
Journal:  ACS Chem Biol       Date:  2020-03-20       Impact factor: 5.100

4.  New Insights into Quinine-DNA Binding Using Raman Spectroscopy and Molecular Dynamics Simulations.

Authors:  David Punihaole; Riley J Workman; Shiv Upadhyay; Craig Van Bruggen; Andrew J Schmitz; Theresa M Reineke; Renee R Frontiera
Journal:  J Phys Chem B       Date:  2018-10-17       Impact factor: 2.991

5.  Testing the Limitations of MD-Based Local Electric Fields Using the Vibrational Stark Effect in Solution: Penicillin G as a Test Case.

Authors:  Jacek Kozuch; Samuel H Schneider; Chu Zheng; Zhe Ji; Richard T Bradshaw; Steven G Boxer
Journal:  J Phys Chem B       Date:  2021-04-26       Impact factor: 2.991

6.  Needles in a haystack: H-bonding in an optogenetic protein observed with isotope labeling and 2D-IR spectroscopy.

Authors:  Jeannette Ruf; Peter Hamm; David Buhrke
Journal:  Phys Chem Chem Phys       Date:  2021-05-05       Impact factor: 3.676

7.  The Interplay of Electrostatics and Chemical Positioning in the Evolution of Antibiotic Resistance in TEM β-Lactamases.

Authors:  Samuel H Schneider; Jacek Kozuch; Steven G Boxer
Journal:  ACS Cent Sci       Date:  2021-11-22       Impact factor: 14.553

8.  Probing the Hydrogen-Bonding Environment of Individual Bases in DNA Duplexes with Isotope-Edited Infrared Spectroscopy.

Authors:  Robert J Fick; Amy Y Liu; Felix Nussbaumer; Christoph Kreutz; Atul Rangadurai; Yu Xu; Roger D Sommer; Honglue Shi; Steve Scheiner; Allison L Stelling
Journal:  J Phys Chem B       Date:  2021-07-08       Impact factor: 2.991

  8 in total

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