Literature DB >> 27510596

Antibiotic resistance: a physicist's view.

Rosalind Allen1, Bartłomiej Waclaw.   

Abstract

The problem of antibiotic resistance poses challenges across many disciplines. One such challenge is to understand the fundamental science of how antibiotics work, and how resistance to them can emerge. This is an area where physicists can make important contributions. Here, we highlight cases where this is already happening, and suggest directions for further physics involvement in antimicrobial research.

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Year:  2016        PMID: 27510596      PMCID: PMC4985032          DOI: 10.1088/1478-3975/13/4/045001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  56 in total

1.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

2.  On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient.

Authors:  Rutger Hermsen; J Barrett Deris; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

3.  Growth feedback as a basis for persister bistability.

Authors:  Jingchen Feng; David A Kessler; Eshel Ben-Jacob; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-16       Impact factor: 11.205

Review 4.  Pseudomonas aeruginosa: all roads lead to resistance.

Authors:  Elena B M Breidenstein; César de la Fuente-Núñez; Robert E W Hancock
Journal:  Trends Microbiol       Date:  2011-06-12       Impact factor: 17.079

5.  Depletion of antibiotic targets has widely varying effects on growth.

Authors:  Jun-Rong Wei; Vidhya Krishnamoorthy; Kenan Murphy; Jee-Hyun Kim; Dirk Schnappinger; Tom Alber; Christopher M Sassetti; Kyu Y Rhee; Eric J Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

6.  Predictability of evolution depends nonmonotonically on population size.

Authors:  Ivan G Szendro; Jasper Franke; J Arjan G M de Visser; Joachim Krug
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

Review 7.  Evolution of Drug Resistance in Bacteria.

Authors:  B Waclaw
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.

Authors:  Mark P Brynildsen; Jonathan A Winkler; Catherine S Spina; I Cody MacDonald; James J Collins
Journal:  Nat Biotechnol       Date:  2013-01-06       Impact factor: 54.908

10.  Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells.

Authors:  Burak Okumus; Dirk Landgraf; Ghee Chuan Lai; Somenath Bakshi; Juan Carlos Arias-Castro; Sadik Yildiz; Dann Huh; Raul Fernandez-Lopez; Celeste N Peterson; Erdal Toprak; Meriem El Karoui; Johan Paulsson
Journal:  Nat Commun       Date:  2016-05-18       Impact factor: 14.919

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  11 in total

1.  Power-law tail in lag time distribution underlies bacterial persistence.

Authors:  Emrah Şimşek; Minsu Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

2.  Theoretical investigation of stochastic clearance of bacteria: first-passage analysis.

Authors:  Hamid Teimouri; Anatoly B Kolomeisky
Journal:  J R Soc Interface       Date:  2019-03-29       Impact factor: 4.118

3.  The finite state projection approach to analyze dynamics of heterogeneous populations.

Authors:  Rob Johnson; Brian Munsky
Journal:  Phys Biol       Date:  2017-05-11       Impact factor: 2.583

4.  Quantitative modelling of nutrient-limited growth of bacterial colonies in microfluidic cultivation.

Authors:  Raphael Hornung; Alexander Grünberger; Christoph Westerwalbesloh; Dietrich Kohlheyer; Gerhard Gompper; Jens Elgeti
Journal:  J R Soc Interface       Date:  2018-02       Impact factor: 4.118

5.  Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients.

Authors:  Matti Gralka; Diana Fusco; Stephen Martis; Oskar Hallatschek
Journal:  Phys Biol       Date:  2017-07-19       Impact factor: 2.583

6.  High-order correlations in species interactions lead to complex diversity-stability relationships for ecosystems.

Authors:  Elgin Korkmazhan; Alexander R Dunn
Journal:  Phys Rev E       Date:  2022-01       Impact factor: 2.707

Review 7.  Bacterial growth: a statistical physicist's guide.

Authors:  Rosalind J Allen; Bartlomiej Waclaw
Journal:  Rep Prog Phys       Date:  2018-10-01

8.  Predicting the dynamics of bacterial growth inhibition by ribosome-targeting antibiotics.

Authors:  Philip Greulich; Jakub Doležal; Matthew Scott; Martin R Evans; Rosalind J Allen
Journal:  Phys Biol       Date:  2017-11-16       Impact factor: 2.583

9.  Epistasis between antibiotic tolerance, persistence, and resistance mutations.

Authors:  Irit Levin-Reisman; Asher Brauner; Irine Ronin; Nathalie Q Balaban
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

10.  Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications.

Authors:  Martín Carballo-Pacheco; Michael D Nicholson; Elin E Lilja; Rosalind J Allen; Bartlomiej Waclaw
Journal:  PLoS Comput Biol       Date:  2020-05-29       Impact factor: 4.475

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