Literature DB >> 28649977

Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients.

Matti Gralka1, Diana Fusco, Stephen Martis, Oskar Hallatschek.   

Abstract

Since penicillin was discovered about 90 years ago, we have become used to using drugs to eradicate unwanted pathogenic cells. However, using drugs to kill bacteria, viruses or cancer cells has the serious side effect of selecting for mutant types that survive the drug attack. A crucial question therefore is how one could eradicate as many cells as possible for a given acceptable risk of drug resistance evolution. We address this general question in a model of drug resistance evolution in spatial drug gradients, which recent experiments and theories have suggested as key drivers of drug resistance. Importantly, our model takes into account the influence of convection, resulting for instance from blood flow. Using stochastic simulations, we study the fates of individual resistance mutations and quantify the trade-off between the killing of wild-type cells and the rise of resistance mutations: shallow gradients and convection into the antibiotic region promote wild-type death, at the cost of increasing the establishment probability of resistance mutations. We can explain these observed trends by modeling the adaptation process as a branching random walk. Our analysis reveals that the trade-off between death and adaptation depends on the relative length scales of the spatial drug gradient and random dispersal, and the strength of convection. Our results show that convection can have a momentous effect on the rate of establishment of new mutations, and may heavily impact the efficiency of antibiotic treatment.

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Year:  2017        PMID: 28649977      PMCID: PMC5728155          DOI: 10.1088/1478-3975/aa7bb3

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  51 in total

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Journal:  Phys Biol       Date:  2016-08-11       Impact factor: 2.583

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Journal:  PLoS Comput Biol       Date:  2009-04-03       Impact factor: 4.475

10.  A platform for the discovery of new macrolide antibiotics.

Authors:  Ian B Seiple; Ziyang Zhang; Pavol Jakubec; Audrey Langlois-Mercier; Peter M Wright; Daniel T Hog; Kazuo Yabu; Senkara Rao Allu; Takehiro Fukuzaki; Peter N Carlsen; Yoshiaki Kitamura; Xiang Zhou; Matthew L Condakes; Filip T Szczypiński; William D Green; Andrew G Myers
Journal:  Nature       Date:  2016-05-19       Impact factor: 49.962

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  5 in total

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Journal:  Phys Rev Lett       Date:  2018-06-08       Impact factor: 9.161

3.  Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity.

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Journal:  Elife       Date:  2021-09-02       Impact factor: 8.140

4.  Environmental heterogeneity can tip the population genetics of range expansions.

Authors:  Matti Gralka; Oskar Hallatschek
Journal:  Elife       Date:  2019-04-12       Impact factor: 8.140

5.  Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-04       Impact factor: 11.205

  5 in total

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