Literature DB >> 31427535

Power-law tail in lag time distribution underlies bacterial persistence.

Emrah Şimşek1, Minsu Kim2,3,4.   

Abstract

Genetically identical microbial cells respond to stress heterogeneously, and this phenotypic heterogeneity contributes to population survival. Quantitative analysis of phenotypic heterogeneity can reveal dynamic features of stochastic mechanisms that generate heterogeneity. Additionally, it can enable a priori prediction of population dynamics, elucidating microbial survival strategies. Here, we quantitatively analyzed the persistence of an Escherichia coli population. When a population is confronted with antibiotics, a majority of cells is killed but a subpopulation called persisters survives the treatment. Previous studies have found that persisters survive antibiotic treatment by maintaining a long period of lag phase. When we quantified the lag time distribution of E. coli cells in a large dynamic range, we found that normal cells rejuvenated with a lag time distribution that is well captured by an exponential decay [exp(-kt)], agreeing with previous studies. This exponential decay indicates that their rejuvenation is governed by a single rate constant kinetics (i.e., k is constant). Interestingly, the lag time distribution of persisters exhibited a long tail captured by a power-law decay. Using a simple quantitative argument, we demonstrated that this power-law decay can be explained by a wide variation of the rate constant k Additionally, by developing a mathematical model based on this biphasic lag time distribution, we quantitatively explained the complex population dynamics of persistence without any ad hoc parameters. The quantitative features of persistence demonstrated in our work shed insights into molecular mechanisms of persistence and advance our knowledge of how a microbial population evades antibiotic treatment.

Entities:  

Keywords:  lag time; persistence; persister; phenotypic heterogeneity; power-law decay

Mesh:

Substances:

Year:  2019        PMID: 31427535      PMCID: PMC6731627          DOI: 10.1073/pnas.1903836116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  68 in total

1.  LIVE/DEAD BacLight : application of a new rapid staining method for direct enumeration of viable and total bacteria in drinking water.

Authors:  L Boulos; M Prévost; B Barbeau; J Coallier; R Desjardins
Journal:  J Microbiol Methods       Date:  1999-07       Impact factor: 2.363

2.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

3.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

4.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

5.  Increased persistence in Escherichia coli caused by controlled expression of toxins or other unrelated proteins.

Authors:  Nora Vázquez-Laslop; Hyunwoo Lee; Alexander A Neyfakh
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

6.  Antibiotic persistence: the role of spontaneous DNA repair response.

Authors:  E A Debbia; S Roveta; A M Schito; L Gualco; A Marchese
Journal:  Microb Drug Resist       Date:  2001       Impact factor: 3.431

7.  Gene network shaping of inherent noise spectra.

Authors:  D W Austin; M S Allen; J M McCollum; R D Dar; J R Wilgus; G S Sayler; N F Samatova; C D Cox; M L Simpson
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

8.  Persister cells and tolerance to antimicrobials.

Authors:  Iris Keren; Niilo Kaldalu; Amy Spoering; Yipeng Wang; Kim Lewis
Journal:  FEMS Microbiol Lett       Date:  2004-01-15       Impact factor: 2.742

9.  SOS response induction by beta-lactams and bacterial defense against antibiotic lethality.

Authors:  Christine Miller; Line Elnif Thomsen; Carina Gaggero; Ronen Mosseri; Hanne Ingmer; Stanley N Cohen
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

10.  Persisters: a distinct physiological state of E. coli.

Authors:  Devang Shah; Zhigang Zhang; Arkady Khodursky; Niilo Kaldalu; Kristi Kurg; Kim Lewis
Journal:  BMC Microbiol       Date:  2006-06-12       Impact factor: 3.605

View more
  12 in total

1.  Observation of universal ageing dynamics in antibiotic persistence.

Authors:  Yoav Kaplan; Shaked Reich; Elyaqim Oster; Shani Maoz; Irit Levin-Reisman; Irine Ronin; Orit Gefen; Oded Agam; Nathalie Q Balaban
Journal:  Nature       Date:  2021-11-17       Impact factor: 49.962

2.  Gold nanocluster adjuvant enables the eradication of persister cells by antibiotics and abolishes the emergence of resistance.

Authors:  Zhixin Cao; Xiaohua Chen; Jing Chen; Anping Xia; Brian Bacacao; Jessica Tran; Devesh Sharma; Laurent A Bekale; Peter L Santa Maria
Journal:  Nanoscale       Date:  2022-07-21       Impact factor: 8.307

3.  Effect of NaCl, high iron, iron chelator and antibiotics on growth, virulence gene expression and drug susceptibility in non-typhoidal Salmonella: an in vitro fitness study.

Authors:  Akshatha Kotian; Vankadari Aditya; Jassiya Sheikh; Sreya Saikrishnan; Praveen Rai; Anirban Chakraborty; Indrani Karunasagar; Vijaya Kumar Deekshit
Journal:  Arch Microbiol       Date:  2022-10-11       Impact factor: 2.667

4.  Quantifying the impact of ecological memory on the dynamics of interacting communities.

Authors:  Moein Khalighi; Guilhem Sommeria-Klein; Didier Gonze; Karoline Faust; Leo Lahti
Journal:  PLoS Comput Biol       Date:  2022-06-03       Impact factor: 4.779

5.  Persistence as an Optimal Hedging Strategy.

Authors:  Alexander P Browning; Jesse A Sharp; Tarunendu Mapder; Christopher M Baker; Kevin Burrage; Matthew J Simpson
Journal:  Biophys J       Date:  2020-11-28       Impact factor: 4.033

6.  When to wake up? The optimal waking-up strategies for starvation-induced persistence.

Authors:  Yusuke Himeoka; Namiko Mitarai
Journal:  PLoS Comput Biol       Date:  2021-02-11       Impact factor: 4.475

7.  Phenotypic-dependent variability and the emergence of tolerance in bacterial populations.

Authors:  José Camacho Mateu; Matteo Sireci; Miguel A Muñoz
Journal:  PLoS Comput Biol       Date:  2021-09-23       Impact factor: 4.475

8.  Bacterial respiration during stationary phase induces intracellular damage that leads to delayed regrowth.

Authors:  Spencer Cesar; Lisa Willis; Kerwyn Casey Huang
Journal:  iScience       Date:  2022-01-15

9.  Power laws in the Roman Empire: a survival analysis.

Authors:  P L Ramos; L F Costa; F Louzada; F A Rodrigues
Journal:  R Soc Open Sci       Date:  2021-07-28       Impact factor: 2.963

10.  Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.

Authors:  Ekaterina Krasnopeeva; Faris Sinjab; Dai Le; Teuta Pilizota; Minsu Kim
Journal:  mBio       Date:  2021-07-13       Impact factor: 7.867

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.