Literature DB >> 27470319

Case report: on the use of the HID-Ion AmpliSeq™ Ancestry Panel in a real forensic case.

C Hollard1, C Keyser2,3,4, T Delabarde2,4, A Gonzalez2, C Vilela Lamego3,4, V Zvénigorosky3, B Ludes3,4,5,6.   

Abstract

In the absence of any other conclusive forensic evidence, DNA profiling is the method of choice for body identification. This study focuses on the case of a carbonized corpse whose complete autosomal short tandem repeat (STR) profile could not lead to direct identification by the investigators. To assist in the progress of investigation, we endeavoured to determine the biogeographical origin and eye colour of the deceased individual. Along with Y chromosome and mitochondrial DNA analyses, we applied a next-generation sequencing (NGS) approach to the study of ancestry informative markers (AIMs) using the HID-Ion AmpliSeq™ Ancestry Panel launched by Thermo Fisher Scientific. This work gave us the opportunity to test this new technology in a real forensic case. Although this study highlights the benefits of such a combined approach, as it markedly improves the specificity of the biogeographical profile, it also underlines the need for the accurate characterization of a larger collection of reference populations and the necessity of caution in data interpretation.

Entities:  

Keywords:  Ancestry; Degraded DNA; Next-generation sequencing; Unidentified body

Mesh:

Substances:

Year:  2016        PMID: 27470319     DOI: 10.1007/s00414-016-1425-1

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  25 in total

1.  Evaluation of the Illumina(®) Beta Version ForenSeq™ DNA Signature Prep Kit for use in genetic profiling.

Authors:  Jennifer D Churchill; Sarah E Schmedes; Jonathan L King; Bruce Budowle
Journal:  Forensic Sci Int Genet       Date:  2015-09-21       Impact factor: 4.882

2.  52 additional reference population samples for the 55 AISNP panel.

Authors:  Andrew J Pakstis; Eva Haigh; Lotfi Cherni; Amel Ben Ammar ElGaaied; Alison Barton; Baigalmaa Evsanaa; Ariunaa Togtokh; Jane Brissenden; Janet Roscoe; Ozlem Bulbul; Gonul Filoglu; Cemal Gurkan; Kelly A Meiklejohn; James M Robertson; Cai-Xia Li; Yi-Liang Wei; Hui Li; Usha Soundararajan; Haseena Rajeevan; Judith R Kidd; Kenneth K Kidd
Journal:  Forensic Sci Int Genet       Date:  2015-08-14       Impact factor: 4.882

3.  Paleogenetical study of pre-Columbian samples from Pampa Grande (Salta, Argentina).

Authors:  Fransisco R Carnese; Fanny Mendisco; Christine Keyser; Cristina B Dejean; Jean-Michel Dugoujon; Claudio M Bravi; Bertrand Ludes; Eric Crubézy
Journal:  Am J Phys Anthropol       Date:  2010-03       Impact factor: 2.868

4.  Performance of a next generation sequencing SNP assay on degraded DNA.

Authors:  Katherine Butler Gettings; Kevin M Kiesler; Peter M Vallone
Journal:  Forensic Sci Int Genet       Date:  2015-05-27       Impact factor: 4.882

5.  Sousse, Tunisia: tumultuous history and high Y-STR diversity.

Authors:  Karima Fadhlaoui-Zid; Shilpa Chennakrishnaiah; Ramzi Zemni; Sagy Grinberg; Rene J Herrera; Amel Benammar-Elgaaied
Journal:  Electrophoresis       Date:  2012-12       Impact factor: 3.535

6.  Eurasiaplex: a forensic SNP assay for differentiating European and South Asian ancestries.

Authors:  C Phillips; A Freire Aradas; A K Kriegel; M Fondevila; O Bulbul; C Santos; F Serrulla Rech; M D Perez Carceles; Á Carracedo; P M Schneider; M V Lareu
Journal:  Forensic Sci Int Genet       Date:  2013-03-26       Impact factor: 4.882

7.  Strong genetic admixture in the Altai at the Middle Bronze Age revealed by uniparental and ancestry informative markers.

Authors:  Clémence Hollard; Christine Keyser; Pierre-Henri Giscard; Turbat Tsagaan; Noost Bayarkhuu; Jan Bemmann; Eric Crubézy; Bertrand Ludes
Journal:  Forensic Sci Int Genet       Date:  2014-06-02       Impact factor: 4.882

Review 8.  Forensic DNA Phenotyping: Predicting human appearance from crime scene material for investigative purposes.

Authors:  Manfred Kayser
Journal:  Forensic Sci Int Genet       Date:  2015-02-16       Impact factor: 4.882

9.  Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America.

Authors:  Roman Kosoy; Rami Nassir; Chao Tian; Phoebe A White; Lesley M Butler; Gabriel Silva; Rick Kittles; Marta E Alarcon-Riquelme; Peter K Gregersen; John W Belmont; Francisco M De La Vega; Michael F Seldin
Journal:  Hum Mutat       Date:  2009-01       Impact factor: 4.878

10.  Introducing the Forensic Research/Reference on Genetics knowledge base, FROG-kb.

Authors:  Haseena Rajeevan; Usha Soundararajan; Andrew J Pakstis; Kenneth K Kidd
Journal:  Investig Genet       Date:  2012-09-01
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  6 in total

1.  An alternate workflow for preparing Precision ID Ancestry and Identity Panel libraries for Illumina sequencing.

Authors:  Melissa Kr Scheible; Emma K Timpano; Laura M Boggs; Kelly A Meiklejohn
Journal:  Int J Legal Med       Date:  2021-03-04       Impact factor: 2.686

Review 2.  Increasing the reach of forensic genetics with massively parallel sequencing.

Authors:  Bruce Budowle; Sarah E Schmedes; Frank R Wendt
Journal:  Forensic Sci Med Pathol       Date:  2017-06-19       Impact factor: 2.007

3.  Assessment of the Precision ID Ancestry panel.

Authors:  Muna Al-Asfi; Dennis McNevin; Bhavik Mehta; Daniel Power; Michelle E Gahan; Runa Daniel
Journal:  Int J Legal Med       Date:  2018-03-19       Impact factor: 2.686

4.  Challenges in the recovery of the genetic data from human remains found on the Western Balkan migration route.

Authors:  Lucija Barbarić; Ivana Horjan-Zanki
Journal:  Int J Legal Med       Date:  2022-04-22       Impact factor: 2.686

5.  Mitochondrial DNA in human identification: a review.

Authors:  António Amorim; Teresa Fernandes; Nuno Taveira
Journal:  PeerJ       Date:  2019-08-13       Impact factor: 2.984

Review 6.  Massively parallel sequencing techniques for forensics: A review.

Authors:  Brigitte Bruijns; Roald Tiggelaar; Han Gardeniers
Journal:  Electrophoresis       Date:  2018-08-22       Impact factor: 3.535

  6 in total

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