Literature DB >> 27392357

Multi-Tissue Decomposition of Diffusion MRI Signals via Sparse-Group Estimation.

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Abstract

Sparse estimation techniques are widely utilized in diffusion magnetic resonance imaging (DMRI). In this paper, we present an algorithm for solving the ℓ0 sparse-group estimation problem and apply it to the tissue signal separation problem in DMRI. Our algorithm solves the ℓ0 problem directly, unlike existing approaches that often seek to solve its relaxed approximations. We include the mathematical proofs showing that the algorithm will converge to a solution satisfying the firstorder optimality condition within a finite number of iterations. We apply this algorithm to DMRI data to tease apart signal contributions from white matter, gray matter, and cerebrospinal fluid with the aim of improving the estimation of the fiber orientation distribution function (FODF). Unlike spherical deconvolution approaches that assume an invariant fiber response function (RF), our approach utilizes an RF group to span the signal subspace of each tissue type, allowing greater flexibility in accounting for possible variations of the RF throughout space and within each voxel. Our ℓ0 algorithm allows for the natural groupings of the RFs to be considered during signal decomposition. Experimental results confirm that our method yields estimates of FODFs and volume fractions of tissue compartments with improved robustness and accuracy. Our ℓ0 algorithm is general and can be applied to sparse estimation problems beyond the scope of this paper.

Entities:  

Year:  2016        PMID: 27392357      PMCID: PMC5219847          DOI: 10.1109/TIP.2016.2588328

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  37 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

3.  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data.

Authors:  Alessandro Daducci; Erick J Canales-Rodríguez; Hui Zhang; Tim B Dyrby; Daniel C Alexander; Jean-Philippe Thiran
Journal:  Neuroimage       Date:  2014-10-22       Impact factor: 6.556

4.  Probing tissue microstructure with restriction spectrum imaging: Histological and theoretical validation.

Authors:  Nathan S White; Trygve B Leergaard; Helen D'Arceuil; Jan G Bjaalie; Anders M Dale
Journal:  Hum Brain Mapp       Date:  2012-01-16       Impact factor: 5.038

5.  Spatial transformation of DWI data using non-negative sparse representation.

Authors:  Pew-Thian Yap; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2012-06-13       Impact factor: 10.048

6.  SPHERE: SPherical Harmonic Elastic REgistration of HARDI data.

Authors:  Pew-Thian Yap; Yasheng Chen; Hongyu An; Yang Yang; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2010-12-13       Impact factor: 6.556

7.  Quantification of increased cellularity during inflammatory demyelination.

Authors:  Yong Wang; Qing Wang; Justin P Haldar; Fang-Cheng Yeh; Mingqiang Xie; Peng Sun; Tsang-Wei Tu; Kathryn Trinkaus; Robyn S Klein; Anne H Cross; Sheng-Kwei Song
Journal:  Brain       Date:  2011-12       Impact factor: 13.501

Review 8.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

9.  Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.

Authors:  Jian Cheng; Rachid Deriche; Tianzi Jiang; Dinggang Shen; Pew-Thian Yap
Journal:  Neuroimage       Date:  2014-08-07       Impact factor: 6.556

10.  A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data.

Authors:  G D Parker; D Marshall; P L Rosin; N Drage; S Richmond; D K Jones
Journal:  Neuroimage       Date:  2012-10-22       Impact factor: 6.556

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  14 in total

1.  Reconstructing High-Quality Diffusion MRI Data from Orthogonal Slice-Undersampled Data Using Graph Convolutional Neural Networks.

Authors:  Yoonmi Hong; Geng Chen; Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  Multifold Acceleration of Diffusion MRI via Deep Learning Reconstruction from Slice-Undersampled Data.

Authors:  Yoonmi Hong; Geng Chen; Pew-Thian Yap; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2019-05-22

3.  Spatio-angular consistent construction of neonatal diffusion MRI atlases.

Authors:  Behrouz Saghafi; Jaeil Kim; Geng Chen; Feng Shi; Weili Lin; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2017-03-27       Impact factor: 5.038

4.  A Multi-Tissue Global Estimation Framework for Asymmetric Fiber Orientation Distributions.

Authors:  Ye Wu; Yuanjing Feng; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-13

Review 5.  The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development.

Authors:  Brittany R Howell; Martin A Styner; Wei Gao; Pew-Thian Yap; Li Wang; Kristine Baluyot; Essa Yacoub; Geng Chen; Taylor Potts; Andrew Salzwedel; Gang Li; John H Gilmore; Joseph Piven; J Keith Smith; Dinggang Shen; Kamil Ugurbil; Hongtu Zhu; Weili Lin; Jed T Elison
Journal:  Neuroimage       Date:  2018-03-22       Impact factor: 6.556

6.  XQ-SR: Joint x-q space super-resolution with application to infant diffusion MRI.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-06-22       Impact factor: 8.545

7.  Dictionary-based fiber orientation estimation with improved spatial consistency.

Authors:  Chuyang Ye; Jerry L Prince
Journal:  Med Image Anal       Date:  2017-11-23       Impact factor: 8.545

8.  Robust Construction of Diffusion MRI Atlases with Correction for Inter-Subject Fiber Dispersion.

Authors:  Zhanlong Yang; Geng Chen; Dinggang Shen; Pew-Thian Yap
Journal:  Comput Diffus MRI (2016)       Date:  2017-05-13

9.  Noise reduction in diffusion MRI using non-local self-similar information in joint x-q space.

Authors:  Geng Chen; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-01-21       Impact factor: 13.828

10.  Robust Fusion of Diffusion MRI Data for Template Construction.

Authors:  Zhanlong Yang; Geng Chen; Dinggang Shen; Pew-Thian Yap
Journal:  Sci Rep       Date:  2017-10-11       Impact factor: 4.379

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