Literature DB >> 32161432

Multifold Acceleration of Diffusion MRI via Deep Learning Reconstruction from Slice-Undersampled Data.

Yoonmi Hong1, Geng Chen1, Pew-Thian Yap1, Dinggang Shen1.   

Abstract

Diffusion MRI (dMRI), while powerful for characterization of tissue microstructure, suffers from long acquisition time. In this paper, we present a method for effective diffusion MRI reconstruction from slice-undersampled data. Instead of full diffusion-weighted (DW) image volumes, only a subsample of equally-spaced slices need to be acquired. We show that complementary information from DW volumes corresponding to different diffusion wavevectors can be harnessed using graph convolutional neural networks for reconstruction of the full DW volumes. The experimental results indicate a high acceleration factor of up to 5 can be achieved with minimal information loss.

Entities:  

Keywords:  Accelerated acquisition; Adversarial learning; Diffusion MRI; Graph CNN; Super resolution

Year:  2019        PMID: 32161432      PMCID: PMC7065677          DOI: 10.1007/978-3-030-20351-1_41

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  15 in total

1.  Superresolution in MRI: application to human white matter fiber tract visualization by diffusion tensor imaging.

Authors:  S Peled; Y Yeshurun
Journal:  Magn Reson Med       Date:  2001-01       Impact factor: 4.668

2.  Weighted graph cuts without eigenvectors a multilevel approach.

Authors:  Inderjit S Dhillon; Yuqiang Guan; Brian Kulis
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-11       Impact factor: 6.226

3.  Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging.

Authors:  S Mori; B J Crain; V P Chacko; P C van Zijl
Journal:  Ann Neurol       Date:  1999-02       Impact factor: 10.422

4.  Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations.

Authors:  Gwendolyn Van Steenkiste; Ben Jeurissen; Jelle Veraart; Arnold J den Dekker; Paul M Parizel; Dirk H J Poot; Jan Sijbers
Journal:  Magn Reson Med       Date:  2015-01-22       Impact factor: 4.668

5.  Super-Resolution Reconstruction of Diffusion-Weighted Images using 4D Low-Rank and Total Variation

Authors:  Feng Shi; Jian Cheng; Li Wang; Pew-Thian Yap; Dinggang Shen
Journal:  Comput Diffus MRI (2015)       Date:  2016-04-09

6.  Accelerated High Spatial Resolution Diffusion-Weighted Imaging.

Authors:  Benoit Scherrer; Onur Afacan; Maxime Taquet; Sanjay P Prabhu; Ali Gholipour; Simon K Warfield
Journal:  Inf Process Med Imaging       Date:  2015

7.  Estimation of fiber orientations using neighborhood information.

Authors:  Chuyang Ye; Jiachen Zhuo; Rao P Gullapalli; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-05-16       Impact factor: 8.545

8.  A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.

Authors:  Lipeng Ning; Kawin Setsompop; Oleg Michailovich; Nikos Makris; Martha E Shenton; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2015-10-23       Impact factor: 6.556

9.  3-D Fully Convolutional Networks for Multimodal Isointense Infant Brain Image Segmentation.

Authors:  Dong Nie; Li Wang; Ehsan Adeli; Cuijin Lao; Weili Lin; Dinggang Shen
Journal:  IEEE Trans Cybern       Date:  2018-02-08       Impact factor: 11.448

10.  Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Authors:  Stamatios N Sotiropoulos; Saad Jbabdi; Junqian Xu; Jesper L Andersson; Steen Moeller; Edward J Auerbach; Matthew F Glasser; Moises Hernandez; Guillermo Sapiro; Mark Jenkinson; David A Feinberg; Essa Yacoub; Christophe Lenglet; David C Van Essen; Kamil Ugurbil; Timothy E J Behrens
Journal:  Neuroimage       Date:  2013-05-20       Impact factor: 6.556

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  2 in total

Review 1.  What's new and what's next in diffusion MRI preprocessing.

Authors:  Chantal M W Tax; Matteo Bastiani; Jelle Veraart; Eleftherios Garyfallidis; M Okan Irfanoglu
Journal:  Neuroimage       Date:  2021-12-26       Impact factor: 7.400

2.  Estimating Tissue Microstructure with Undersampled Diffusion Data via Graph Convolutional Neural Networks.

Authors:  Geng Chen; Yoonmi Hong; Yongqin Zhang; Jaeil Kim; Khoi Minh Huynh; Jiquan Ma; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29
  2 in total

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