Literature DB >> 21147231

SPHERE: SPherical Harmonic Elastic REgistration of HARDI data.

Pew-Thian Yap1, Yasheng Chen, Hongyu An, Yang Yang, John H Gilmore, Weili Lin, Dinggang Shen.   

Abstract

In contrast to the more common Diffusion Tensor Imaging (DTI), High Angular Resolution Diffusion Imaging (HARDI) allows superior delineation of angular microstructures of brain white matter, and makes possible multiple-fiber modeling of each voxel for better characterization of brain connectivity. However, the complex orientation information afforded by HARDI makes registration of HARDI images more complicated than scalar images. In particular, the question of how much orientation information is needed for satisfactory alignment has not been sufficiently addressed. Low order orientation representation is generally more robust than high order representation, although the latter provides more information for correct alignment of fiber pathways. However, high order representation, when naïvely utilized, might not necessarily be conducive to improving registration accuracy since similar structures with significant orientation differences prior to proper alignment might be mistakenly taken as non-matching structures. We present in this paper a HARDI registration algorithm, called SPherical Harmonic Elastic REgistration (SPHERE), which in a principled means hierarchically extracts orientation information from HARDI data for structural alignment. The image volumes are first registered using robust, relatively direction invariant features derived from the Orientation Distribution Function (ODF), and the alignment is then further refined using spherical harmonic (SH) representation with gradually increasing orders. This progression from non-directional, single-directional to multi-directional representation provides a systematic means of extracting directional information given by diffusion-weighted imaging. Coupled with a template-subject-consistent soft-correspondence-matching scheme, this approach allows robust and accurate alignment of HARDI data. Experimental results show marked increase in accuracy over a state-of-the-art DTI registration algorithm.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21147231      PMCID: PMC3035740          DOI: 10.1016/j.neuroimage.2010.12.015

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  28 in total

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5.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

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Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

6.  Analysis of brain white matter via fiber tract modeling.

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Review 7.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
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8.  Diffusion tensor image registration using tensor geometry and orientation features.

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Authors:  Susumu Mori; Walter E Kaufmann; Christos Davatzikos; Bram Stieltjes; Laura Amodei; Kim Fredericksen; Godfrey D Pearlson; Elias R Melhem; Meiyappan Solaiyappan; Gerald V Raymond; Hugo W Moser; Peter C M van Zijl
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10.  Spatial normalization of the fiber orientation distribution based on high angular resolution diffusion imaging data.

Authors:  Xin Hong; Lori R Arlinghaus; Adam W Anderson
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  16 in total

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4.  Angular Resolution Enhancement of Diffusion MRI Data Using Inter-Subject Information Transfer.

Authors:  Geng Chen; Pei Zhang; Ke Li; Chong-Yaw Wee; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
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Review 5.  The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development.

Authors:  Brittany R Howell; Martin A Styner; Wei Gao; Pew-Thian Yap; Li Wang; Kristine Baluyot; Essa Yacoub; Geng Chen; Taylor Potts; Andrew Salzwedel; Gang Li; John H Gilmore; Joseph Piven; J Keith Smith; Dinggang Shen; Kamil Ugurbil; Hongtu Zhu; Weili Lin; Jed T Elison
Journal:  Neuroimage       Date:  2018-03-22       Impact factor: 6.556

6.  Spatial transformation of DWI data using non-negative sparse representation.

Authors:  Pew-Thian Yap; Dinggang Shen
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7.  Uncertainty estimation in diffusion MRI using the nonlocal bootstrap.

Authors:  Pew-Thian Yap; Hongyu An; Yasheng Chen; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2014-04-29       Impact factor: 10.048

8.  Large deformation diffeomorphic registration of diffusion-weighted images with explicit orientation optimization.

Authors:  Pei Zhang; Marc Niethammer; Dinggang Shen; Pew-Thian Yap
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9.  Large deformation diffeomorphic registration of diffusion-weighted images.

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10.  Registration and analysis of white matter group differences with a multi-fiber model.

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