Literature DB >> 22711770

Spatial transformation of DWI data using non-negative sparse representation.

Pew-Thian Yap, Dinggang Shen.   

Abstract

This paper presents an algorithm to transform and reconstruct diffusion-weighted imaging (DWI) data for alignment of micro-structures in association with spatial transformations. The key idea is to decompose the diffusion signal profile, a function defined on a unit sphere, into a series of weighted diffusion basis functions (DBFs), reorient these weighted DBFs independently based on the local affine transformation, and then recompose the reoriented weighted DBFs to obtain the final transformed diffusion signal profile. The decomposition is performed in a sparse representation framework in recognition of the fact that each diffusion signal profile is often resulting from a small number of fiber populations. A non-negative constraint is further imposed so that noise-induced negative lobes in the profile can be avoided. The proposed framework also explicitly models the isotropic component of the diffusion signals to avoid undesirable artifacts during transformation. In contrast to existing methods, the current algorithm allows the transformation to be executed directly in the signal space, thus allowing any diffusion models to be fitted to the data after transformation.

Entities:  

Mesh:

Year:  2012        PMID: 22711770      PMCID: PMC8162748          DOI: 10.1109/TMI.2012.2204766

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  33 in total

1.  Fiber modeling and clustering based on neuroanatomical features.

Authors:  Qian Wang; Pew-Thian Yap; Guorong Wu; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2007-02-21       Impact factor: 6.556

4.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

5.  Identification of MCI individuals using structural and functional connectivity networks.

Authors:  Chong-Yaw Wee; Pew-Thian Yap; Daoqiang Zhang; Kevin Denny; Jeffrey N Browndyke; Guy G Potter; Kathleen A Welsh-Bohmer; Lihong Wang; Dinggang Shen
Journal:  Neuroimage       Date:  2011-10-14       Impact factor: 6.556

6.  ODF RECONSTRUCTION IN Q-BALL IMAGING WITH SOLID ANGLE CONSIDERATION.

Authors:  Iman Aganj; Christophe Lenglet; Guillermo Sapiro
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009 Jun-Jul

7.  SPHERE: SPherical Harmonic Elastic REgistration of HARDI data.

Authors:  Pew-Thian Yap; Yasheng Chen; Hongyu An; Yang Yang; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2010-12-13       Impact factor: 6.556

8.  F-TIMER: fast tensor image morphing for elastic registration.

Authors:  Pew-Thian Yap; Guorong Wu; Hongtu Zhu; Weili Lin; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2010-03-18       Impact factor: 10.048

9.  Longitudinal tractography with application to neuronal fiber trajectory reconstruction in neonates.

Authors:  Pew-Thian Yap; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

10.  TIMER: tensor image morphing for elastic registration.

Authors:  Pew-Thian Yap; Guorong Wu; Hongtu Zhu; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2009-05-03       Impact factor: 6.556

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  18 in total

1.  Multi-Tissue Decomposition of Diffusion MRI Signals via Sparse-Group Estimation.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2016-07-07       Impact factor: 10.856

2.  Angular Resolution Enhancement of Diffusion MRI Data Using Inter-Subject Information Transfer.

Authors:  Geng Chen; Pei Zhang; Ke Li; Chong-Yaw Wee; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Comput Diffus MRI (2015)       Date:  2016-04-09

3.  Block-Based Statistics for Robust Non-parametric Morphometry.

Authors:  Geng Chen; Pei Zhang; Ke Li; Chong-Yaw Wee; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Patch Based Tech Med Imaging (2015)       Date:  2015-10

4.  Accelerating Global Tractography Using Parallel Markov Chain Monte Carlo.

Authors:  Haiyong Wu; Geng Chen; Zhongxue Yang; Dinggang Shen; Pew-Thian Yap
Journal:  Comput Diffus MRI (2015)       Date:  2016-04-09

Review 5.  The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development.

Authors:  Brittany R Howell; Martin A Styner; Wei Gao; Pew-Thian Yap; Li Wang; Kristine Baluyot; Essa Yacoub; Geng Chen; Taylor Potts; Andrew Salzwedel; Gang Li; John H Gilmore; Joseph Piven; J Keith Smith; Dinggang Shen; Kamil Ugurbil; Hongtu Zhu; Weili Lin; Jed T Elison
Journal:  Neuroimage       Date:  2018-03-22       Impact factor: 6.556

6.  Brain Tissue Segmentation Based on Diffusion MRI Using ℓ0 Sparse-Group Representation Classification.

Authors:  Pew-Thian Yap; Yong Zhang; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-18

7.  Uncertainty estimation in diffusion MRI using the nonlocal bootstrap.

Authors:  Pew-Thian Yap; Hongyu An; Yasheng Chen; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2014-04-29       Impact factor: 10.048

8.  Large deformation diffeomorphic registration of diffusion-weighted images with explicit orientation optimization.

Authors:  Pei Zhang; Marc Niethammer; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

9.  Large deformation diffeomorphic registration of diffusion-weighted images.

Authors:  Pei Zhang; Marc Niethammer; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

10.  Identification of infants at high-risk for autism spectrum disorder using multiparameter multiscale white matter connectivity networks.

Authors:  Yan Jin; Chong-Yaw Wee; Feng Shi; Kim-Han Thung; Dong Ni; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2015-09-14       Impact factor: 5.038

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