Literature DB >> 29027547

Robust Construction of Diffusion MRI Atlases with Correction for Inter-Subject Fiber Dispersion.

Zhanlong Yang1,2, Geng Chen3,2, Dinggang Shen2, Pew-Thian Yap2.   

Abstract

Construction of brain atlases is generally carried out using a two-step procedure involving registering a population of images to a common space and then fusing the aligned images to form an atlas. In practice, image registration is not perfect and simple averaging of the images will blur structures and cause artifacts. In diffusion MRI, this is further complicated by the possibility of within-voxel fiber misalignment due to natural inter-subject orientation dispersion. In this paper, we propose a method to improve the construction of diffusion atlases in light of inter-subject fiber dispersion. Our method involves a novel q-space (i.e., wavevector space) patch matching mechanism that is incorporated in a mean shift algorithm to seek the most probable signal at each point in q-space. Our method relies on the fact that the mean shift algorithm is a mode seeking algorithm that converges to the mode of a distribution and is hence robustness to outliers. Our method is therefore in effect seeking the most probable signal profile at each voxel given a distribution of profiles. Experimental results confirm that our method yields cleaner fiber orientation distribution functions with less artifacts caused by dispersion.

Entities:  

Keywords:  Atlases; Azimuthal Equidistant Projection; Diffusion MRI; Mean Shift; Patch Matching; x-q Space

Year:  2017        PMID: 29027547      PMCID: PMC5627623          DOI: 10.1007/978-3-319-54130-3_9

Source DB:  PubMed          Journal:  Comput Diffus MRI (2016)


  6 in total

Review 1.  Brain templates and atlases.

Authors:  Alan C Evans; Andrew L Janke; D Louis Collins; Sylvain Baillet
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

2.  Two-dimensional polar harmonic transforms for invariant image representation.

Authors:  Pew-Thian Yap; Xudong Jiang; Alex Chichung Kot
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-07       Impact factor: 6.226

3.  Multi-Tissue Decomposition of Diffusion MRI Signals via Sparse-Group Estimation.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2016-07-07       Impact factor: 10.856

4.  An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images.

Authors:  P Coupe; P Yger; S Prima; P Hellier; C Kervrann; C Barillot
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

5.  MRI denoising using non-local means.

Authors:  José V Manjón; José Carbonell-Caballero; Juan J Lull; Gracián García-Martí; Luís Martí-Bonmatí; Montserrat Robles
Journal:  Med Image Anal       Date:  2008-02-29       Impact factor: 8.545

Review 6.  Construction and application of human neonatal DTI atlases.

Authors:  Rajiv Deshpande; Linda Chang; Kenichi Oishi
Journal:  Front Neuroanat       Date:  2015-10-26       Impact factor: 3.856

  6 in total
  1 in total

1.  Robust Fusion of Diffusion MRI Data for Template Construction.

Authors:  Zhanlong Yang; Geng Chen; Dinggang Shen; Pew-Thian Yap
Journal:  Sci Rep       Date:  2017-10-11       Impact factor: 4.379

  1 in total

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