Literature DB >> 25108182

Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.

Jian Cheng1, Rachid Deriche2, Tianzi Jiang3, Dinggang Shen4, Pew-Thian Yap5.   

Abstract

Spherical Deconvolution (SD) is commonly used for estimating fiber Orientation Distribution Functions (fODFs) from diffusion-weighted signals. Existing SD methods can be classified into two categories: 1) Continuous Representation based SD (CR-SD), where typically Spherical Harmonic (SH) representation is used for convenient analytical solutions, and 2) Discrete Representation based SD (DR-SD), where the signal profile is represented by a discrete set of basis functions uniformly oriented on the unit sphere. A feasible fODF should be non-negative and should integrate to unity throughout the unit sphere S(2). However, to our knowledge, most existing SH-based SD methods enforce non-negativity only on discretized points and not the whole continuum of S(2). Maximum Entropy SD (MESD) and Cartesian Tensor Fiber Orientation Distributions (CT-FOD) are the only SD methods that ensure non-negativity throughout the unit sphere. They are however computational intensive and are susceptible to errors caused by numerical spherical integration. Existing SD methods are also known to overestimate the number of fiber directions, especially in regions with low anisotropy. DR-SD introduces additional error in peak detection owing to the angular discretization of the unit sphere. This paper proposes a SD framework, called Non-Negative SD (NNSD), to overcome all the limitations above. NNSD is significantly less susceptible to the false-positive peaks, uses SH representation for efficient analytical spherical deconvolution, and allows accurate peak detection throughout the whole unit sphere. We further show that NNSD and most existing SD methods can be extended to work on multi-shell data by introducing a three-dimensional fiber response function. We evaluated NNSD in comparison with Constrained SD (CSD), a quadratic programming variant of CSD, MESD, and an L1-norm regularized non-negative least-squares DR-SD. Experiments on synthetic and real single-/multi-shell data indicate that NNSD improves estimation performance in terms of mean difference of angles, peak detection consistency, and anisotropy contrast between isotropic and anisotropic regions.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Diffusion MRI; Fiber Orientation Distribution Function; Non-negativity constraint; Spherical deconvolution; Spherical harmonics

Mesh:

Year:  2014        PMID: 25108182      PMCID: PMC8155806          DOI: 10.1016/j.neuroimage.2014.07.062

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  43 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging.

Authors:  Van J Wedeen; Patric Hagmann; Wen-Yih Isaac Tseng; Timothy G Reese; Robert M Weisskoff
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

4.  Measurement of fiber orientation distributions using high angular resolution diffusion imaging.

Authors:  Adam W Anderson
Journal:  Magn Reson Med       Date:  2005-11       Impact factor: 4.668

5.  Symmetric positive-definite Cartesian tensor orientation distribution functions (CT-ODF).

Authors:  Yonas T Weldeselassie; Angelos Barmpoutis; M Stella Atkins
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

6.  Enriched white matter connectivity networks for accurate identification of MCI patients.

Authors:  Chong-Yaw Wee; Pew-Thian Yap; Wenbin Li; Kevin Denny; Jeffrey N Browndyke; Guy G Potter; Kathleen A Welsh-Bohmer; Lihong Wang; Dinggang Shen
Journal:  Neuroimage       Date:  2010-10-21       Impact factor: 6.556

7.  On the relation between the ISRA and the EM algorithm for positron emission tomography.

Authors:  A R De Pierro
Journal:  IEEE Trans Med Imaging       Date:  1993       Impact factor: 10.048

8.  Regularized, fast, and robust analytical Q-ball imaging.

Authors:  Maxime Descoteaux; Elaine Angelino; Shaun Fitzgibbons; Rachid Deriche
Journal:  Magn Reson Med       Date:  2007-09       Impact factor: 4.668

9.  Altered structural connectivity in neonates at genetic risk for schizophrenia: a combined study using morphological and white matter networks.

Authors:  Feng Shi; Pew-Thian Yap; Wei Gao; Weili Lin; John H Gilmore; Dinggang Shen
Journal:  Neuroimage       Date:  2012-05-19       Impact factor: 6.556

10.  Efficient and robust computation of PDF features from diffusion MR signal.

Authors:  Haz-Edine Assemlal; David Tschumperlé; Luc Brun
Journal:  Med Image Anal       Date:  2009-07-12       Impact factor: 8.545

View more
  12 in total

1.  Multi-Tissue Decomposition of Diffusion MRI Signals via Sparse-Group Estimation.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2016-07-07       Impact factor: 10.856

2.  Single- and Multiple-Shell Uniform Sampling Schemes for Diffusion MRI Using Spherical Codes.

Authors:  Jian Cheng; Dinggang Shen; Pew-Thian Yap; Peter J Basser
Journal:  IEEE Trans Med Imaging       Date:  2017-09-25       Impact factor: 10.048

3.  Histologically derived fiber response functions for diffusion MRI vary across white matter fibers-An ex vivo validation study in the squirrel monkey brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Vaibhav Janve; Bennett A Landman; Adam W Anderson
Journal:  NMR Biomed       Date:  2019-03-25       Impact factor: 4.044

4.  Versatile, robust, and efficient tractography with constrained higher-order tensor fODFs.

Authors:  Michael Ankele; Lek-Heng Lim; Samuel Groeschel; Thomas Schultz
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-04-29       Impact factor: 2.924

5.  Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging.

Authors:  Giang Tran; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2015-05-07       Impact factor: 10.048

6.  When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity.

Authors:  Dogu Baran Aydogan; Russell Jacobs; Stephanie Dulawa; Summer L Thompson; Maite Christi Francois; Arthur W Toga; Hongwei Dong; James A Knowles; Yonggang Shi
Journal:  Brain Struct Funct       Date:  2018-04-16       Impact factor: 3.270

7.  Greedy Algorithms for Nonnegativity-Constrained Simultaneous Sparse Recovery.

Authors:  Daeun Kim; Justin P Haldar
Journal:  Signal Processing       Date:  2016-02-06       Impact factor: 4.662

8.  Estimation of fiber orientations using neighborhood information.

Authors:  Chuyang Ye; Jiachen Zhuo; Rao P Gullapalli; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-05-16       Impact factor: 8.545

9.  Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.

Authors:  Jian Cheng; Rachid Deriche; Tianzi Jiang; Dinggang Shen; Pew-Thian Yap
Journal:  Neuroimage       Date:  2014-08-07       Impact factor: 6.556

10.  Connectome imaging for mapping human brain pathways.

Authors:  Y Shi; A W Toga
Journal:  Mol Psychiatry       Date:  2017-05-02       Impact factor: 15.992

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.