| Literature DB >> 27019866 |
Sid E O'Bryant1, Simone Lista2, Robert A Rissman3, Melissa Edwards4, Fan Zhang5, James Hall6, Henrik Zetterberg7, Simon Lovestone8, Veer Gupta9, Neill Graff-Radford10, Ralph Martins9, Andreas Jeromin11, Stephen Waring12, Esther Oh13, Mitchel Kling14, Laura D Baker15, Harald Hampel2.
Abstract
INTRODUCTION: This study investigated the comparability of potential Alzheimer's disease (AD) biomarkers across blood fractions and assay platforms.Entities:
Keywords: Alzheimer's disease; Biomarker discovery; Blood; Diagnostics; Meso Scale Discovery; Multiplex assay platform; Plasma; Preanalytic processing; Proteins; Rules Based Medicine; Serum; Standardization
Year: 2015 PMID: 27019866 PMCID: PMC4802360 DOI: 10.1016/j.dadm.2015.12.003
Source DB: PubMed Journal: Alzheimers Dement (Amst)
Demographic characteristics of cohort
| Characteristics | AD | Normal controls | |
|---|---|---|---|
| (n = 79) | (n = 65) | ||
| Mean (SD) | Mean (SD) | ||
| Age (y) | 76.1 (8.6) | 71.2 (9.2) | .002 |
| Education (y) | 14.7 (3.0) | 15.5 (2.6) | .02 |
| Sex (male), % | 30 | 32 | .76 |
| 60 | 23 | <.001 | |
| Hispanic ethnicity, % | 3 | 7 | .33 |
| Race (non-Hispanic white), % | 96 | 90 | .04 |
| MMSE | 19.1 (6.4) | 29.6 (0.7) | <.001 |
| CDR-SB | 7.8 (4.1) | 0.0 (0.1) | <.001 |
| Hypertension (% yes), % | 54 | 55 | .86 |
| Dyslipidemia (% yes), % | 51 | 40 | .31 |
| Diabetes (% yes), % | 10 | 11 | .59 |
| Obese (% yes), % | 15 | 14 | .53 |
Abbreviations: AD, Alzheimer's disease; SD, standard deviation; MMSE, mini-mental state examination; CDR-SB, clinical dementia rating sum of boxes scores.
Mean protein values across blood fraction and assay platform
| Marker | MSD | RBM | |||||
|---|---|---|---|---|---|---|---|
| AD | Normal control | AD | Normal control | ||||
| Serum | Plasma | Serum | Plasma | Serum | Plasma | Serum | |
| Mean (SD) | Mean (SD) | Mean (SD) | Mean (SD) | Mean (SD) | Mean (SD) | Mean (SD) | |
| A2M (pg/mL) | 2180,273,262 (488,669,567.0) | 2492,412,927 (1281,547,552) | 2072,211,091 (592,581,531.2) | 2993,631,363 (1715,510,790) | 2.2 (4.0) | 0.9 (0.2) | 1.2 (0.3) |
| β2M (pg/mL) | 2528,759.6 (1061,896.0) | 3006,474.7 (1532,558.3) | 2313,211.85 (1019,598.5) | 3503,494.1 (2082,171.5) | 2.4 (0.9) | 2.4 (1.0) | 2.3 (1.0) |
| Eotaxin3 (pg/mL) | 3.0 (14.7) | 1.4 (1.5) | 1.9 (3.6) | 1.8 (1.6) | 128.5 (140.0) | 278.7 (219.2) | 89.8 (350.5) |
| FABP (pg/mL) | 8401.3 (4402.2) | 7757.3 (4809.8) | 7751.8 (3296.3) | 7480.3 (4514.0) | 3.2 (3.8) | 5.5 (5.7) | 3.2 (4.1) |
| THPO (pg/mL) | 616.4 (205.6) | 488.5 (191.4) | 564.0 (163.6) | 418.2 (163.7) | 7.3 (1.5) | 2.3 (1.0) | 6.0 (1.8) |
| PPY (pg/mL) | 435.0 (539.9) | 946.3 (853.7) | 302.9 (225.5) | 719.6 (664.5) | 147.8 (139.6) | 265.0 (201.5) | 198.3 (196.9) |
| CRP (pg/mL) | 3787.3 (6154.3) | 3928.1 (6242.8) | 8044.2 (13,846.6) | 4326.4 (7052.6) | 3.9 (6.3) | 3.7 (4.6) | 3.3 (4.4) |
| sTNFR1 (pg/mL) | 4239.4 (2291.2) | 3466.3 (1357.4) | 3807.4 (1270.2) | 3262.6 (1248.7) | |||
| IL5 (pg/mL) | 3.1 (19.6) | 12.6 (83.9) | 3.8 (18.7) | 3.0 (11.4) | 6.3 (5.0) | 6.4 (2.8) | 7.2 (4.7) |
| IL6 (pg/mL) | 13.6 (105.5) | 4.8 (5.9) | 2.1 (2.1) | 4.7 (5.6) | 4.2 (3.0) | ||
| IL7 (pg/mL) | 10.4 (4.3) | 4.4 (4.3) | 4.9 (2.5) | 3.5 (3.5) | 80.8 (53.2) | 49.2 (36.3) | 108.9 (61.7) |
| IL10 (pg/mL) | 8.2 (46.2) | 208.1 (1985.9) | 29.2 (119.5) | 11.4 (41.9) | 9.5 (8.2) | 10.1 (5.8) | |
| IL18 (pg/mL) | 227.8 (109.2) | 252.5 (139.6) | 242.48 (112.9) | 271.3 (166.2) | 278.5 (132.6) | 243.3 (93.6) | 296.4 (164.3) |
| I309 (pg/mL) | 3.4 (2.5) | 2.5 (1.5) | 2.8 (2.2) | 2.2 (1.5) | 265.5 (508.6) | 766.0 (1890.0) | 585.7 (2241.8) |
| Factor VII (pg/mL) | 898,400.6 (253,545.6) | 1282,175.0 (866,370.5) | 832,189.1 (221,072.9) | 1710,329.8 (1237,574.5) | 565.2 (198.5) | 591.2 (164.4) | 625.4 (226.1) |
| TARC (pg/mL) | 894.3 (608.0) | 419.9 (388.2) | 761.3 (498.0) | 311.2 (468.2) | |||
| TNC (pg/mL) | 44,085.9 (13,140.6) | 56,351.8 (34,425.1) | 37,734.3 (10,342.9) | 67,010.0 (46,125.5) | |||
| TNF-α (pg/mL) | 3.4 (3.6) | 2.7 (1.0) | 1.3 (0.8) | 2.8 (1.0) | 4.3 (1.7) | 9.4 (4.7) | 5.2 (4.7) |
| SAA (pg/mL) | 9379.4 (18,741.4) | 9351.4 (15,380.3) | 7232.6 (21,202.0) | 7458.3 (24,674.1) | |||
| ICAM1 (pg/mL) | 280.7 (64.5) | 313.8 (83.5) | 321.7 (121.5) | 312.4 (67.3) | 134.0 (40.4) | 107.6 (23.1) | 132.8 (33.5) |
| VCAM1 (pg/mL) | 520.7 (121.5) | 582.6 (189.3) | 482.5 (130.8) | 567.3 (132.1) | 831.3 (212.6) | 772.2 (173.6) | 769.9 (209.8) |
Abbreviations: MSD, Meso Scale Discovery; RBM, Rules Based Medicine; AD, Alzheimer's disease; SD, standard deviation; β2M, beta 2 microglobulin; FABP, fatty acid-binding protein; PPY, pancreatic polypeptide; sTNFR1, soluble tumor necrosis factor receptor 1; IL, interleukin; TARC, thymus and activation-regulated chemokine; TNC, tenascin C; TNF-α, tumor necrosis factor-alpha; SAA, serum amyloid A; ICAM1, intercellular cell-adhesion molecule-1; VCAM1, vascular cell adhesion molecule-1.
Correlations between serum and plasma markers
| Marker | R2 | |
|---|---|---|
| SAA | 0.99 | <.001 |
| IL10 | 0.95 | <.001 |
| FABP | 0.94 | <.001 |
| I309 | 0.94 | <.001 |
| IL5 | 0.94 | <.001 |
| IL6 | 0.94 | <.001 |
| Eotaxin3 | 0.91 | <.001 |
| IL18 | 0.87 | <.001 |
| sTNFR1 | 0.85 | <.001 |
| PPY | 0.81 | <.001 |
| CRP | 0.66 | <.001 |
| THPO | 0.66 | <.001 |
| sVCAM1 | 0.65 | <.001 |
| β2M | 0.56 | <.001 |
| TARC | 0.53 | <.001 |
| A2M | 0.45 | <.001 |
| TNF-α | 0.44 | <.001 |
| sICAM | 0.43 | <.001 |
| IL7 | 0.36 | <.001 |
| FVII | 0.35 | <.001 |
| TNC | 0.08 | >.05 |
Abbreviations: SAA, serum amyloid A; IL, interleukin; FABP, fatty acid-binding protein; sTNFR1, soluble tumor necrosis factor receptor 1; PPY, pancreatic polypeptide; β2M, beta 2 microglobulin; TARC, thymus and activation-regulated chemokine; TNF-α, tumor necrosis factor-alpha; FVII, factor VII; TNC, tenascin C.
Random forest variable importance and diagnostic accuracy for detecting AD with proteomic profile
| MSD Serum | MSD Plasma | RBM Serum | |||
|---|---|---|---|---|---|
| AUC | 0.96 | AUC | 0.76 | AUC | 0.91 |
| SN/SP | 0.91/0.86 | SN/SP | 0.65/0.79 | SN/SP | 0.80/0.90 |
| Rank | Marker | Rank | Marker | Rank | Marker |
| 1 | 1 | Eotaxin3 | 1 | Thrombopoietin | |
| 2 | TNF-α | 2 | PPY | 2 | MIP1α |
| 3 | 3 | 3 | Eotaxin3 | ||
| 4 | 4 | 4 | TNF-α | ||
| 5 | CRP | 5 | TPHO | 5 | Creatine kinase MB |
| 6 | IL10 | 6 | β2M | 6 | FAS ligand |
| 7 | TNC | 7 | sTNFR1 | 7 | Fibrinogen |
| 8 | sICAM1 | 8 | FABP | 8 | IL10 |
| 9 | FVII | 9 | TARC | 9 | IL7 |
| 10 | I309 | 10 | 10 | CA19-9 | |
Abbreviations: AD, Alzheimer's disease; MSD, Meso Scale Discovery; RBM, Rules Based Medicine; AUC, area under the receiver operating characteristic curve; SN, sensitivity; SP, specificity; IL, interleukin; TNF-α, tumor necrosis factor-alpha; PPY, pancreatic polypeptide; MIP1a, macrophage inflammatory protein 1 alpha; THPO, thrombopoietin; β2M, beta 2 microglobulin; TNC, tenascin C; sTNFR1, soluble tumor necrosis factor receptor 1; FABP, fatty acid-binding protein; FVII, factor VII; TARC, thymus and activation-regulated chemokine CA 19-9, cancer antigen 19-9.
NOTE. The AUC was calculated using the full 21-protein model [19]; three bolded markers overlap on the MSD platform from serum to plasma.
Indicates serum markers common across MSD and RBM platforms.
Correlation of protein levels across assay platforms
| Marker | R2 | |
|---|---|---|
| β2M | 0.92 | <.001 |
| IL18 | 0.80 | <.001 |
| FVII | 0.78 | <.001 |
| CRP | 0.74 | <.001 |
| FABP | 0.70 | <.001 |
| sVCAM1 | 0.69 | <.001 |
| A2M | 0.59 | <.001 |
| TNC | 0.53 | <.001 |
| sICAM | 0.47 | <.001 |
| I309 | 0.38 | <.001 |
| TNF-α | 0.19 | .001 |
| THPO | 0.17 | .004 |
| PPY | 0.15 | .01 |
| IL7 | 0.09 | .12 |
| IL10 | 0.01 | .89 |
| Eotaxin3 | 0.01 | .89 |
| IL5 | −0.08 | .17 |
Abbreviations: β2M, beta 2 microglobulin; IL, interleukin; FVII, factor VII; FABP, fatty acid-binding protein; TNC, tenascin C; TNF-α, tumor necrosis factor-alpha; PPY, pancreatic polypeptide.