| Literature DB >> 22163278 |
Sid E O'Bryant1, Guanghua Xiao, Robert Barber, Ryan Huebinger, Kirk Wilhelmsen, Melissa Edwards, Neill Graff-Radford, Rachelle Doody, Ramon Diaz-Arrastia.
Abstract
CONTEXT: There is no rapid and cost effective tool that can be implemented as a front-line screening tool for Alzheimer's disease (AD) at the population level.Entities:
Mesh:
Substances:
Year: 2011 PMID: 22163278 PMCID: PMC3233542 DOI: 10.1371/journal.pone.0028092
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1The density plot the Pearson's correlation coefficients between serum and plasma in TARC cohort.
We used Mclust (model-based clustering algorithm [21]) package in R to fit the data and discovered two clusters in the correlation coefficients: one (red) corresponding to low correlation and the other (blue) corresponding to high correlation. The threshold value that separated these two clusters most effectively is 0.75. The black line is the density plot of all biomarkers. The dots represent the correlation coefficients of the biomarkers and the color indicates the cluster membership.
Figure 2Outline of methods.
Demographic characteristics of the cohorts.
| TARC – serum sample | TARC – plasma sample | ADNI | |||||
| AD (N = 197) | Control (N = 198) | p-value | AD (n = 40) | AD (n = 112) | Control (n = 58) | p-value | |
| Gender (male) | 34.5% | 31.3% | 0.52 | 40% | 42% | 48% | 0.52 |
| Age (years, mean/sd) | 77.4(8.3) | 70.4(8.9) | <0.001 | 75.7(1.6) | 75.2(8.1) | 75.5(5.8) | 0.63 |
| Education (years, mean/sd) | 14.0(3.5) | 15.5(2.7) | <0.001 | 14.5(0.6) | 15.1(3.2) | 15.6(2.7) | 0.38 |
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| 59.3% | 26.5% | <0.001 | 50% | 68% | 9% | <0.001 |
Note: TARC = Texas Alzheimer's Research Consortium; ADNI = Alzheimer's Disease Neuroimaging Initiative. Fisher exact test was used for categorical outcomes (Gender, APOE*E4 positive) and Wilcoxon test was used for continuous outcomes (Age, Education).
Biomarkers and Clinical Labs Across Cohorts.
| Marker | Pearson correlation for serum vs. plasma (TARC cohort) | Mean difference in TARCC | Mean difference in ADNI |
| C Reactive Protein | 0.97 | −3.35 | −2.07 |
| Adiponectin | 0.95 | 1.88 | 1.79 |
| Pancreatic polypeptide | 0.89 | 4.29 | 2.78 |
| Fatty Acid Binding Protein | 0.88 | 1.72 | −0.79 |
| IL 18 | 0.86 | −1.87 | 0.51 |
| Beta 2 Microglobulin | 0.85 | 3.14 | 2.09 |
| Tenascin C | 0.85 | 4.56 | 2.93 |
| I.309 | 0.8 | 1.12 | −1.68 |
| Factor VII | 0.8 | −2.78 | −1.26 |
| VCAM 1 | 0.78 | 3.00 | 2.82 |
| MCP 1 | 0.75 | −2.74 | −0.30 |
| Total Cholesterol | – | 0.13 | 0.78 |
| Triglycerides | – | −0.63 | 1.59 |
| Homocysteine | – | 3.99 | 1.06 |
Note: Mean difference reflects the mean difference between cases and controls divided by the its standard deviation.
Diagnostic accuracy of the serum-plasma algorithm.
| AUC (95% CI) | SN (95% CI) | SP (95% CI) | |
| biomarker + clinical + demographic | 0.88 (0.83–0.93) | 0.75 (0.67–0.83) | 0.91 (0.80–0.96) |
| biomarker + demographic | 0.88 (0.83–0.93) | 0.79 (0.71–0.86) | 0.87 (0.75–0.93) |
| Biomarker + clinical | 0.71 (0.63–0.79) | 0.73 (0.64–0.81) | 0.60 (0.47–0.72) |
| biomarker risk score alone | 0.70 (0.62–0.78) | 0.54 (0.45–0.63) | 0.78 (0.65–0.87) |
| clinical variables alone | 0.59 (0.50–0.68) | 0.53 (0.43–0.62) | 0.72 (0.58–0.82) |
| demographic variables alone | 0.81 (0.75–0.88) | 0.70 (0.61–0.78) | 0.92 (0.82–0.97) |
| CSF tau/abeta ratio | 0.92 (0.87–0.96) | 0.84 (0.76–0.90) | 1.00 (0.93–1.00) |
Note: AUC = area under the receiver operating characteristic curve; SN = sensitivity; SP = specificity; CI = confidence interval; demographic = age, gender, education, APOE*E4 status (presence/absence); clinical = glucose, triglycerides, total cholesterol, homocysteine.
Figure 3ROC curve for serum-plasma based biomarker algorithm.
Each line represents the AUC of the respective portions of the algorithm with the yellow line reflecting chance.