Literature DB >> 26761536

Natural Language Processing Technologies in Radiology Research and Clinical Applications.

Tianrun Cai1, Andreas A Giannopoulos1, Sheng Yu1, Tatiana Kelil1, Beth Ripley1, Kanako K Kumamaru1, Frank J Rybicki1, Dimitrios Mitsouras1.   

Abstract

The migration of imaging reports to electronic medical record systems holds great potential in terms of advancing radiology research and practice by leveraging the large volume of data continuously being updated, integrated, and shared. However, there are significant challenges as well, largely due to the heterogeneity of how these data are formatted. Indeed, although there is movement toward structured reporting in radiology (ie, hierarchically itemized reporting with use of standardized terminology), the majority of radiology reports remain unstructured and use free-form language. To effectively "mine" these large datasets for hypothesis testing, a robust strategy for extracting the necessary information is needed. Manual extraction of information is a time-consuming and often unmanageable task. "Intelligent" search engines that instead rely on natural language processing (NLP), a computer-based approach to analyzing free-form text or speech, can be used to automate this data mining task. The overall goal of NLP is to translate natural human language into a structured format (ie, a fixed collection of elements), each with a standardized set of choices for its value, that is easily manipulated by computer programs to (among other things) order into subcategories or query for the presence or absence of a finding. The authors review the fundamentals of NLP and describe various techniques that constitute NLP in radiology, along with some key applications. ©RSNA, 2016.

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Year:  2016        PMID: 26761536      PMCID: PMC4734053          DOI: 10.1148/rg.2016150080

Source DB:  PubMed          Journal:  Radiographics        ISSN: 0271-5333            Impact factor:   5.333


  46 in total

1.  Selective automated indexing of findings and diagnoses in radiology reports.

Authors:  W Hersh; M Mailhot; C Arnott-Smith; H Lowe
Journal:  J Biomed Inform       Date:  2001-08       Impact factor: 6.317

2.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

3.  Use of natural language processing to translate clinical information from a database of 889,921 chest radiographic reports.

Authors:  George Hripcsak; John H M Austin; Philip O Alderson; Carol Friedman
Journal:  Radiology       Date:  2002-07       Impact factor: 11.105

4.  Automated extraction and normalization of findings from cancer-related free-text radiology reports.

Authors:  Burke W Mamlin; Daniel T Heinze; Clement J McDonald
Journal:  AMIA Annu Symp Proc       Date:  2003

5.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

6.  Identification of findings suspicious for breast cancer based on natural language processing of mammogram reports.

Authors:  N L Jain; C Friedman
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

7.  Effect of Evidence-based Clinical Decision Support on the Use and Yield of CT Pulmonary Angiographic Imaging in Hospitalized Patients.

Authors:  Ruth M Dunne; Ivan K Ip; Sarah Abbett; Esteban F Gershanik; Ali S Raja; Andetta Hunsaker; Ramin Khorasani
Journal:  Radiology       Date:  2015-02-13       Impact factor: 11.105

8.  Classification of CT pulmonary angiography reports by presence, chronicity, and location of pulmonary embolism with natural language processing.

Authors:  Sheng Yu; Kanako K Kumamaru; Elizabeth George; Ruth M Dunne; Arash Bedayat; Matey Neykov; Andetta R Hunsaker; Karin E Dill; Tianxi Cai; Frank J Rybicki
Journal:  J Biomed Inform       Date:  2014-08-10       Impact factor: 6.317

9.  Automated detection using natural language processing of radiologists recommendations for additional imaging of incidental findings.

Authors:  Sayon Dutta; William J Long; David F M Brown; Andrew T Reisner
Journal:  Ann Emerg Med       Date:  2013-03-30       Impact factor: 5.721

10.  Automated Classification of Radiology Reports for Acute Lung Injury: Comparison of Keyword and Machine Learning Based Natural Language Processing Approaches.

Authors:  Imre Solti; Colin R Cooke; Fei Xia; Mark M Wurfel
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2009-11
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  55 in total

1.  tbiExtractor: A framework for extracting traumatic brain injury common data elements from radiology reports.

Authors:  Margaret Mahan; Daniel Rafter; Hannah Casey; Marta Engelking; Tessneem Abdallah; Charles Truwit; Mark Oswood; Uzma Samadani
Journal:  PLoS One       Date:  2020-07-01       Impact factor: 3.240

2.  Using Natural Language Processing of Free-Text Radiology Reports to Identify Type 1 Modic Endplate Changes.

Authors:  Hannu T Huhdanpaa; W Katherine Tan; Sean D Rundell; Pradeep Suri; Falgun H Chokshi; Bryan A Comstock; Patrick J Heagerty; Kathryn T James; Andrew L Avins; Srdjan S Nedeljkovic; David R Nerenz; David F Kallmes; Patrick H Luetmer; Karen J Sherman; Nancy L Organ; Brent Griffith; Curtis P Langlotz; David Carrell; Saeed Hassanpour; Jeffrey G Jarvik
Journal:  J Digit Imaging       Date:  2018-02       Impact factor: 4.056

3.  Comprehensive Word-Level Classification of Screening Mammography Reports Using a Neural Network Sequence Labeling Approach.

Authors:  Ryan G Short; John Bralich; Dave Bogaty; Nicholas T Befera
Journal:  J Digit Imaging       Date:  2019-10       Impact factor: 4.056

Review 4.  Current Applications and Future Impact of Machine Learning in Radiology.

Authors:  Garry Choy; Omid Khalilzadeh; Mark Michalski; Synho Do; Anthony E Samir; Oleg S Pianykh; J Raymond Geis; Pari V Pandharipande; James A Brink; Keith J Dreyer
Journal:  Radiology       Date:  2018-06-26       Impact factor: 11.105

5.  The Association Between Arthralgia and Vedolizumab Using Natural Language Processing.

Authors:  Tianrun Cai; Tzu-Chieh Lin; Allison Bond; Jie Huang; Gwendolyn Kane-Wanger; Andrew Cagan; Shawn N Murphy; Ashwin N Ananthakrishnan; Katherine P Liao
Journal:  Inflamm Bowel Dis       Date:  2018-09-15       Impact factor: 5.325

6.  Automated annotation and classification of BI-RADS assessment from radiology reports.

Authors:  Sergio M Castro; Eugene Tseytlin; Olga Medvedeva; Kevin Mitchell; Shyam Visweswaran; Tanja Bekhuis; Rebecca S Jacobson
Journal:  J Biomed Inform       Date:  2017-04-18       Impact factor: 6.317

7.  Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods.

Authors:  Gaurav Trivedi; Charmgil Hong; Esmaeel R Dadashzadeh; Robert M Handzel; Harry Hochheiser; Shyam Visweswaran
Journal:  Int J Med Inform       Date:  2019-06-06       Impact factor: 4.046

8.  Investigation of Low-Dose CT Lung Cancer Screening Scan "Over-Range" Issue Using Machine Learning Methods.

Authors:  Donglai Huo; Mark Kiehn; Ann Scherzinger
Journal:  J Digit Imaging       Date:  2019-12       Impact factor: 4.056

9.  Association Between Antithrombotic Medication Use After Bioprosthetic Aortic Valve Replacement and Outcomes in the Veterans Health Administration System.

Authors:  Dawn M Bravata; Jessica M Coffing; Devan Kansagara; Jennifer Myers; Lauren Murphy; Barbara J Homoya; Anthony J Perkins; Kathryn Snow; Jacquelyn A Quin; Ying Zhang; Laura J Myers
Journal:  JAMA Surg       Date:  2019-02-20       Impact factor: 14.766

Review 10.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

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