Literature DB >> 21152268

Automated Classification of Radiology Reports for Acute Lung Injury: Comparison of Keyword and Machine Learning Based Natural Language Processing Approaches.

Imre Solti1, Colin R Cooke, Fei Xia, Mark M Wurfel.   

Abstract

This paper compares the performance of keyword and machine learning-based chest x-ray report classification for Acute Lung Injury (ALI). ALI mortality is approximately 30 percent. High mortality is, in part, a consequence of delayed manual chest x-ray classification. An automated system could reduce the time to recognize ALI and lead to reductions in mortality. For our study, 96 and 857 chest x-ray reports in two corpora were labeled by domain experts for ALI. We developed a keyword and a Maximum Entropy-based classification system. Word unigram and character n-grams provided the features for the machine learning system. The Maximum Entropy algorithm with character 6-gram achieved the highest performance (Recall=0.91, Precision=0.90 and F-measure=0.91) on the 857-report corpus. This study has shown that for the classification of ALI chest x-ray reports, the machine learning approach is superior to the keyword based system and achieves comparable results to highest performing physician annotators.

Entities:  

Year:  2009        PMID: 21152268      PMCID: PMC2998031          DOI: 10.1109/BIBMW.2009.5332081

Source DB:  PubMed          Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)        ISSN: 2156-1125


  4 in total

1.  A simple algorithm for identifying negated findings and diseases in discharge summaries.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  J Biomed Inform       Date:  2001-10       Impact factor: 6.317

2.  Validation of an electronic surveillance system for acute lung injury.

Authors:  Vitaly Herasevich; Murat Yilmaz; Hasrat Khan; Rolf D Hubmayr; Ognjen Gajic
Journal:  Intensive Care Med       Date:  2009-03-12       Impact factor: 17.440

3.  Validation study of an automated electronic acute lung injury screening tool.

Authors:  Helen C Azzam; Satjeet S Khalsa; Richard Urbani; Chirag V Shah; Jason D Christie; Paul N Lanken; Barry D Fuchs
Journal:  J Am Med Inform Assoc       Date:  2009-04-23       Impact factor: 4.497

4.  Recent trends in acute lung injury mortality: 1996-2005.

Authors:  Sara E Erickson; Greg S Martin; J Lucian Davis; Michael A Matthay; Mark D Eisner
Journal:  Crit Care Med       Date:  2009-05       Impact factor: 7.598

  4 in total
  20 in total

1.  Automatic classification of mammography reports by BI-RADS breast tissue composition class.

Authors:  Bethany Percha; Houssam Nassif; Jafi Lipson; Elizabeth Burnside; Daniel Rubin
Journal:  J Am Med Inform Assoc       Date:  2012-01-29       Impact factor: 4.497

Review 2.  Natural Language Processing Technologies in Radiology Research and Clinical Applications.

Authors:  Tianrun Cai; Andreas A Giannopoulos; Sheng Yu; Tatiana Kelil; Beth Ripley; Kanako K Kumamaru; Frank J Rybicki; Dimitrios Mitsouras
Journal:  Radiographics       Date:  2016 Jan-Feb       Impact factor: 5.333

3.  Automatic inference of BI-RADS final assessment categories from narrative mammography report findings.

Authors:  Imon Banerjee; Selen Bozkurt; Emel Alkim; Hersh Sagreiya; Allison W Kurian; Daniel L Rubin
Journal:  J Biomed Inform       Date:  2019-02-23       Impact factor: 6.317

4.  Automated classification of radiology reports to facilitate retrospective study in radiology.

Authors:  Yihua Zhou; Per K Amundson; Fang Yu; Marcus M Kessler; Tammie L S Benzinger; Franz J Wippold
Journal:  J Digit Imaging       Date:  2014-12       Impact factor: 4.056

5.  The Nature and Variability of Automated Practice Alerts Derived from Electronic Health Records in a U.S. Nationwide Critical Care Research Network.

Authors:  Cody Benthin; Sonal Pannu; Akram Khan; Michelle Gong
Journal:  Ann Am Thorac Soc       Date:  2016-10

6.  Automatic classification of RDoC positive valence severity with a neural network.

Authors:  Cheryl Clark; Ben Wellner; Rachel Davis; John Aberdeen; Lynette Hirschman
Journal:  J Biomed Inform       Date:  2017-07-08       Impact factor: 6.317

7.  A Scalable Machine Learning Approach for Inferring Probabilistic US-LI-RADS Categorization.

Authors:  Imon Banerjee; Hailye H Choi; Terry Desser; Daniel L Rubin
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

8.  A Computable Phenotype for Acute Respiratory Distress Syndrome Using Natural Language Processing and Machine Learning.

Authors:  Majid Afshar; Cara Joyce; Anthony Oakey; Perry Formanek; Philip Yang; Matthew M Churpek; Richard S Cooper; Susan Zelisko; Ron Price; Dmitriy Dligach
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

9.  Use of a support vector machine for categorizing free-text notes: assessment of accuracy across two institutions.

Authors:  Adam Wright; Allison B McCoy; Stanislav Henkin; Abhivyakti Kale; Dean F Sittig
Journal:  J Am Med Inform Assoc       Date:  2013-03-30       Impact factor: 4.497

10.  Mechanical ventilation and acute lung injury in emergency department patients with severe sepsis and septic shock: an observational study.

Authors:  Brian M Fuller; Nicholas M Mohr; Matthew Dettmer; Sarah Kennedy; Kevin Cullison; Rebecca Bavolek; Nicholas Rathert; Craig McCammon
Journal:  Acad Emerg Med       Date:  2013-07       Impact factor: 3.451

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