Literature DB >> 32696394

In-Cell NMR of Intrinsically Disordered Proteins in Mammalian Cells.

Juan A Gerez1, Natalia C Prymaczok2, Roland Riek3.   

Abstract

In-cell NMR enables structural insights at atomic resolution of proteins in their natural environment. To date, very few methods have been developed to study proteins by in-cell NMR in mammalian systems. Here we describe a detailed protocol to conduct in-cell NMR on the intrinsically disordered protein of alpha-Synuclein (αSyn) in mammalian cells. This chapter includes a simplified expression and purification protocol of recombinant αSyn and its delivery into mammalian cells. The chapter also describes how to assess the cell leakage that might occur to the cells, the setup of the instrument, and how to perform basic analyses with the obtained NMR data.

Entities:  

Keywords:  Electroporation; IDP; Leakage; Nuclear magnetic resonance; α-synuclein

Mesh:

Substances:

Year:  2020        PMID: 32696394     DOI: 10.1007/978-1-0716-0524-0_45

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

Review 1.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

2.  A gel-encapsulated bioreactor system for NMR studies of protein-protein interactions in living mammalian cells.

Authors:  Satoshi Kubo; Noritaka Nishida; Yuko Udagawa; Osamu Takarada; Shinji Ogino; Ichio Shimada
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-29       Impact factor: 15.336

Review 3.  Live cell NMR.

Authors:  Darón I Freedberg; Philipp Selenko
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

4.  In-cell NMR reveals potential precursor of toxic species from SOD1 fALS mutants.

Authors:  Enrico Luchinat; Letizia Barbieri; Jeffrey T Rubino; Tatiana Kozyreva; Francesca Cantini; Lucia Banci
Journal:  Nat Commun       Date:  2014-11-27       Impact factor: 14.919

5.  Observation of NMR signals from proteins introduced into living mammalian cells by reversible membrane permeabilization using a pore-forming toxin, streptolysin O.

Authors:  Shinji Ogino; Satoshi Kubo; Ryo Umemoto; Shuxian Huang; Noritaka Nishida; Ichio Shimada
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

6.  High-resolution multi-dimensional NMR spectroscopy of proteins in human cells.

Authors:  Kohsuke Inomata; Ayako Ohno; Hidehito Tochio; Shin Isogai; Takeshi Tenno; Ikuhiko Nakase; Toshihide Takeuchi; Shiroh Futaki; Yutaka Ito; Hidekazu Hiroaki; Masahiro Shirakawa
Journal:  Nature       Date:  2009-03-05       Impact factor: 49.962

7.  Structural disorder of monomeric α-synuclein persists in mammalian cells.

Authors:  Francois-Xavier Theillet; Andres Binolfi; Beata Bekei; Andrea Martorana; Honor May Rose; Marchel Stuiver; Silvia Verzini; Dorothea Lorenz; Marleen van Rossum; Daniella Goldfarb; Philipp Selenko
Journal:  Nature       Date:  2016-01-25       Impact factor: 49.962

8.  A bioreactor for in-cell protein NMR.

Authors:  Naima G Sharaf; Christopher O Barnes; Lisa M Charlton; Gregory B Young; Gary J Pielak
Journal:  J Magn Reson       Date:  2009-10-23       Impact factor: 2.229

Review 9.  In-cell NMR: a topical review.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  IUCrJ       Date:  2017-02-15       Impact factor: 4.769

10.  Intracellular repair of oxidation-damaged α-synuclein fails to target C-terminal modification sites.

Authors:  Andres Binolfi; Antonio Limatola; Silvia Verzini; Jonas Kosten; Francois-Xavier Theillet; Honor May Rose; Beata Bekei; Marchel Stuiver; Marleen van Rossum; Philipp Selenko
Journal:  Nat Commun       Date:  2016-01-25       Impact factor: 14.919

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  1 in total

1.  Challenges in describing the conformation and dynamics of proteins with ambiguous behavior.

Authors:  Joel Roca-Martinez; Tamas Lazar; Jose Gavalda-Garcia; David Bickel; Rita Pancsa; Bhawna Dixit; Konstantina Tzavella; Pathmanaban Ramasamy; Maite Sanchez-Fornaris; Isel Grau; Wim F Vranken
Journal:  Front Mol Biosci       Date:  2022-08-03
  1 in total

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