Literature DB >> 27516170

Biophysics in drug discovery: impact, challenges and opportunities.

Jean-Paul Renaud1,2,3, Chun-Wa Chung4, U Helena Danielson5,6, Ursula Egner7, Michael Hennig8,9, Roderick E Hubbard10,11, Herbert Nar12.   

Abstract

Over the past 25 years, biophysical technologies such as X-ray crystallography, nuclear magnetic resonance spectroscopy, surface plasmon resonance spectroscopy and isothermal titration calorimetry have become key components of drug discovery platforms in many pharmaceutical companies and academic laboratories. There have been great improvements in the speed, sensitivity and range of possible measurements, providing high-resolution mechanistic, kinetic, thermodynamic and structural information on compound-target interactions. This Review provides a framework to understand this evolution by describing the key biophysical methods, the information they can provide and the ways in which they can be applied at different stages of the drug discovery process. We also discuss the challenges for current technologies and future opportunities to use biophysical methods to solve drug discovery problems.

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Year:  2016        PMID: 27516170     DOI: 10.1038/nrd.2016.123

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  147 in total

Review 1.  Optical biosensors in drug discovery.

Authors:  Matthew A Cooper
Journal:  Nat Rev Drug Discov       Date:  2002-07       Impact factor: 84.694

2.  Inhibition of HIV-1 by non-nucleoside reverse transcriptase inhibitors via an induced fit mechanism-Importance of slow dissociation and relaxation rates for antiviral efficacy.

Authors:  Malin Elinder; Philippe Selhorst; Guido Vanham; Bo Oberg; Lotta Vrang; U Helena Danielson
Journal:  Biochem Pharmacol       Date:  2010-07-01       Impact factor: 5.858

Review 3.  Integrated planar optical waveguide interferometer biosensors: a comparative review.

Authors:  Peter Kozma; Florian Kehl; Eva Ehrentreich-Förster; Christoph Stamm; Frank F Bier
Journal:  Biosens Bioelectron       Date:  2014-02-28       Impact factor: 10.618

4.  Free-solution, label-free molecular interactions studied by back-scattering interferometry.

Authors:  Darryl J Bornhop; Joey C Latham; Amanda Kussrow; Dmitry A Markov; Richard D Jones; Henrik S Sørensen
Journal:  Science       Date:  2007-09-21       Impact factor: 47.728

5.  Integrated biophysical approach to fragment screening and validation for fragment-based lead discovery.

Authors:  Hernani Leonardo Silvestre; Thomas L Blundell; Chris Abell; Alessio Ciulli
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-19       Impact factor: 11.205

6.  ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets.

Authors:  Andrew J Souers; Joel D Leverson; Erwin R Boghaert; Scott L Ackler; Nathaniel D Catron; Jun Chen; Brian D Dayton; Hong Ding; Sari H Enschede; Wayne J Fairbrother; David C S Huang; Sarah G Hymowitz; Sha Jin; Seong Lin Khaw; Peter J Kovar; Lloyd T Lam; Jackie Lee; Heather L Maecker; Kennan C Marsh; Kylie D Mason; Michael J Mitten; Paul M Nimmer; Anatol Oleksijew; Chang H Park; Cheol-Min Park; Darren C Phillips; Andrew W Roberts; Deepak Sampath; John F Seymour; Morey L Smith; Gerard M Sullivan; Stephen K Tahir; Chris Tse; Michael D Wendt; Yu Xiao; John C Xue; Haichao Zhang; Rod A Humerickhouse; Saul H Rosenberg; Steven W Elmore
Journal:  Nat Med       Date:  2013-01-06       Impact factor: 53.440

7.  Identification of Small Molecule Inhibitors of Tau Aggregation by Targeting Monomeric Tau As a Potential Therapeutic Approach for Tauopathies.

Authors:  Marcus Pickhardt; Thomas Neumann; Daniel Schwizer; Kari Callaway; Michele Vendruscolo; Dale Schenk; Peter St George-Hyslop; Eva M Mandelkow; Christopher M Dobson; Lisa McConlogue; Eckhard Mandelkow; Gergely Tóth
Journal:  Curr Alzheimer Res       Date:  2015       Impact factor: 3.498

Review 8.  Serial femtosecond crystallography: the first five years.

Authors:  Ilme Schlichting
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

9.  Isothermal titration calorimetry with micelles: Thermodynamics of inhibitor binding to carnitine palmitoyltransferase 2 membrane protein.

Authors:  Samantha Perspicace; Arne C Rufer; Ralf Thoma; Francis Mueller; Michael Hennig; Simona Ceccarelli; Tanja Schulz-Gasch; Joachim Seelig
Journal:  FEBS Open Bio       Date:  2013-04-19       Impact factor: 2.693

10.  Structural basis of ligand recognition in 5-HT3 receptors.

Authors:  Divya Kesters; Andrew J Thompson; Marijke Brams; René van Elk; Radovan Spurny; Matthis Geitmann; Jose M Villalgordo; Albert Guskov; U Helena Danielson; Sarah C R Lummis; August B Smit; Chris Ulens
Journal:  EMBO Rep       Date:  2012-11-30       Impact factor: 8.807

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  70 in total

Review 1.  Understanding the Contributions of Conformational Changes, Thermodynamics, and Kinetics of RNA-Small Molecule Interactions.

Authors:  Aline Umuhire Juru; Neeraj N Patwardhan; Amanda E Hargrove
Journal:  ACS Chem Biol       Date:  2019-05-01       Impact factor: 5.100

2.  Fragment Screening by NMR.

Authors:  Ben J Davis
Journal:  Methods Mol Biol       Date:  2021

Review 3.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

Review 4.  Drug discovery technologies to identify and characterize modulators of the pregnane X receptor and the constitutive androstane receptor.

Authors:  Sergio C Chai; Wenwei Lin; Yongtao Li; Taosheng Chen
Journal:  Drug Discov Today       Date:  2019-02-04       Impact factor: 7.851

Review 5.  Mechanistic enzymology in drug discovery: a fresh perspective.

Authors:  Geoffrey A Holdgate; Thomas D Meek; Rachel L Grimley
Journal:  Nat Rev Drug Discov       Date:  2017-12-01       Impact factor: 84.694

Review 6.  Biased signalling: from simple switches to allosteric microprocessors.

Authors:  Jeffrey S Smith; Robert J Lefkowitz; Sudarshan Rajagopal
Journal:  Nat Rev Drug Discov       Date:  2018-01-05       Impact factor: 84.694

Review 7.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

8.  Phase-separated condensate-aided enrichment of biomolecular interactions for high-throughput drug screening in test tubes.

Authors:  Min Zhou; Weiping Li; Jian Li; Leiming Xie; Rongbo Wu; Liang Wang; Shuai Fu; Wei Su; Jianyang Hu; Jing Wang; Pilong Li
Journal:  J Biol Chem       Date:  2020-05-27       Impact factor: 5.157

Review 9.  Induced protein degradation: an emerging drug discovery paradigm.

Authors:  Ashton C Lai; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2016-11-25       Impact factor: 84.694

Review 10.  Impact of the Protein Data Bank on antineoplastic approvals.

Authors:  John D Westbrook; Rose Soskind; Brian P Hudson; Stephen K Burley
Journal:  Drug Discov Today       Date:  2020-02-14       Impact factor: 7.851

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