Literature DB >> 22760824

Investigation of quadruplex structure under physiological conditions using in-cell NMR.

Robert Hänsel1, Silvie Foldynová-Trantírková, Volker Dötsch, Lukáš Trantírek.   

Abstract

In this chapter we describe the application of in-cell NMR spectroscopy to the investigation of G-quadruplex structures inside living Xenopus laevis oocytes and in X. laevis egg extract. First, in-cell NMR spectroscopy of nucleic acids (NA) is introduced and applications and limitations of the approach are discussed. In the following text the application of in-cell NMR spectroscopy to investigation of G-quadruplexes are reviewed. Special emphasis is given to the discussion of the influence of the intracellular environmental factors such as low molecular weight compounds, molecular crowding, and hydration on structural behavior of G-quadruplexes. Finally, future perspectives of in-cell NMR spectroscopy for quantitative characterization of G-quadruplexes and NA are discussed.

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Year:  2013        PMID: 22760824     DOI: 10.1007/128_2012_332

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  9 in total

Review 1.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

2.  Investigation of higher-order RNA G-quadruplex structures in vitro and in living cells by 19F NMR spectroscopy.

Authors:  Hong-Liang Bao; Yan Xu
Journal:  Nat Protoc       Date:  2018-03-08       Impact factor: 13.491

3.  Characterization of proteins by in-cell NMR spectroscopy in cultured mammalian cells.

Authors:  Letizia Barbieri; Enrico Luchinat; Lucia Banci
Journal:  Nat Protoc       Date:  2016-05-19       Impact factor: 13.491

Review 4.  RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.

Authors:  Marta M Fay; Shawn M Lyons; Pavel Ivanov
Journal:  J Mol Biol       Date:  2017-05-26       Impact factor: 5.469

5.  Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences.

Authors:  Robert C Monsen; Lynn W DeLeeuw; William L Dean; Robert D Gray; Srinivas Chakravarthy; Jesse B Hopkins; Jonathan B Chaires; John O Trent
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

6.  Insight into formation propensity of pseudocircular DNA G-hairpins.

Authors:  Martina Lenarčič Živković; Martin Gajarský; Kateřina Beková; Petr Stadlbauer; Lukáš Vicherek; Magdalena Petrová; Radovan Fiala; Ivan Rosenberg; Jiří Šponer; Janez Plavec; Lukáš Trantírek
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

7.  Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.

Authors:  Daniel Krafčík; Eva Ištvánková; Šimon Džatko; Pavlína Víšková; Silvie Foldynová-Trantírková; Lukáš Trantírek
Journal:  Int J Mol Sci       Date:  2021-06-03       Impact factor: 5.923

Review 8.  Epigenetic Modulation of Chromatin States and Gene Expression by G-Quadruplex Structures.

Authors:  Chiara Reina; Vincenzo Cavalieri
Journal:  Int J Mol Sci       Date:  2020-06-11       Impact factor: 5.923

9.  In-Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells.

Authors:  P Broft; S Dzatko; M Krafcikova; A Wacker; Robert Hänsel-Hertsch; Volker Dötsch; L Trantirek; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2020-11-09       Impact factor: 16.823

  9 in total

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