Literature DB >> 26594416

Crystal structure of 5-[4-(di-ethyl-amino)-benzyl-idene]-2,2-dimethyl-1,3-dioxane-4,6-dione.

Egija Stepina1, Dmitrijs Stepanovs2, Inese Mierina1, Mara Jure1.   

Abstract

The title compound, C17H21NO4, consists of substituted Meldrum's acid with a [4-(di-ethyl-amino)-phen-yl]methyl-idene fragment attached to the fifth position. The heterocycle assumes a distorted boat conformation. The planar part of heterocycle is almost coplanar with the benzene ring due to the presence of a long conjugated system in the mol-ecule. This leads to the formation of C-H⋯O-type intra-molecular contacts. As a result of the absence of hydrogen-bond donors in the structure, the crystal packing is controlled by van der Waals forces and weak C-H⋯O inter-actions, which associate the mol-ecules into inversion dimers.

Entities:  

Keywords:  5-aryl­methyl­ene-2,2-dimethyl-1,3-dioxan-4,6-dione; aryl­idene Meldrum’s acid; crystal structure; intra­molecular hydrogen bonding; organic synthesis

Year:  2015        PMID: 26594416      PMCID: PMC4647437          DOI: 10.1107/S2056989015017673

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Aryl­idene Meldrum’s acids (5-aryl­methyl­idene-2,2-dimethyl-1,3-dioxane-4,6-diones) are attractive building blocks in organic chemistry: these compounds are used for the synthesis of different heterocycles. Recent examples include: pyrazolidinones (Pair et al., 2014 ▸), lactames (Zhang et al., 2013 ▸), carbocycles (e.g. Trost & Maruniak, 2013 ▸) and aliphatic compounds (e.g. Mohite & Bhat, 2013 ▸). Aryl­idene Meldrum’s acids can be easily converted to aryl­methyl Meldrum‘s acids [for a description of a typical procedure, see Mierina et al. (2015 ▸)], which serve as starting compounds for the synthesis of various valuable compounds [for a mini-review, see Mierina (2014 ▸)]. Apart from their wide application in syntheses, these derivatives of Meldrum’s acid have been studied as platelet aggregation inhibitors (El Maatougui et al., 2012 ▸), anti­malarial agents and anti-oxidants (Sandhu et al., 2010 ▸) and photostable UV-filters for cosmetic applications (Habeck & Krause, 1999 ▸).

Structural commentary

The title compound, C17H21NO4, consists of substituted Meldrum’s acid with a [4-(di­ethyl­amino)­phen­yl]methyl­idene fragment attached to fifth position (Fig. 1 ▸.). The heterocycle assumes a distorted boat conformation. Atoms C2 and C5 deviate from the least-squares plane [maximum deviations ±0.013 (1) Å] calculated for the other four atoms of the heterocycle by 0.549 (3) and 0.154 (3) Å, respectively. The planar part of heterocycle is nearly coplanar with the benzene ring [dihedral angle = 8.05 (10)°] due to the presence of a long conjugated system in the mol­ecule. This leads to the formation of C—H⋯O-type intra­molecular contacts (Table 1 ▸).
Figure 1

The mol­ecular structure the title compound, showing 50% probability displacement ellipsoids and the atomic numbering

Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C13H13O190.932.132.915(2)141
C17H17BO20i 0.972.393.268(3)151

Symmetry code: (i) .

π–π stacking inter­actions are also observed between conjugated systems of the mol­ecules. The distance between the corresponding least-square planes is 3.54 (su?) Å. The crystal structure of the zwitterionic form of 5-[4-(di­eth­ylamino)­benz­yl]-2,2-dimethyl-1,3-dioxane-4,6-dione has been already reported (Mierina et al., 2015 ▸). The title compound differs from this by the presence of a double bond between atoms C5 and C7.

Supra­molecular features

Because of the absence of hydrogen-bond donors in the structure, the crystal packing is controlled by van der Waals forces and weak C—H⋯O inter­actions, which associate mol­ecules into inversion dimers (Fig. 2 ▸, Table 1 ▸).
Figure 2

The crystal packing of the title compound, viewed along the b axis. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details).

Database survey

Several 5-aryl­idene-2,2-dimethyl-1,3-dioxane-4,6-diones (Huck et al., 1995 ▸; Gould et al., 1998 ▸; Novoa de Armas et al., 2000 ▸; O’Leary et al., 2001 ▸; O’Leary & Wallis 2006 ▸; Crawford & McNab, 2009 ▸; Wilsily & Fillion, 2009 ▸; Zeng, 2010a ▸,b ▸, 2011a ▸,b ▸,c ▸, 2013 ▸; Jie, 2012 ▸; García-Álvarez et al., 2013 ▸; Dey et al., 2015 ▸) and their spiro-analogues (Sato et al., 1989 ▸; Zeng, 2011d ▸,e ▸,f ▸; Zeng et al. 2013 ▸) have been characterized by X-ray analysis. However, information on the crystal structure of 5-aryl­methyl­idene-2,2-dimethyl-1,3-dioxane-4,6-diones containing an amino functionality on the aromatic ring is not available.

Synthesis and crystallization

5-[4-(Di­ethyl­amino)­phenyl­methyl­idene]-2,2-dimethyl-1,3-dioxane-4,6-dione was obtained from Meldrum’s acid (1.00 g, 6.9 mmol) and 4-di­ethyl­amino­benzaldehyde (1.27 g, 6.9 mmol) by heating in water (50 ml) at 348 K for 2 h, followed by cooling to room temperature and filtration of the formed precipitate and recrystallization from ethanol (1.62 g, 80%) analogously to the method described previously (Mierina et al., 2015 ▸). The spectroscopic and physical data correspond to those in the literature (Mierina et al., 2015 ▸). X-ray quality single crystals were obtained by slow evaporation from ethanol.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The C-bound H atoms were positioned geometrically and refined as riding on their parent atoms: C—H = 0.93–0.98Å with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC17H21NO4
M r 303.35
Crystal system, space groupMonoclinic, P21/c
Temperature (K)173
a, b, c ()7.8662(2), 11.4601(3), 18.1517(6)
()96.858(1)
V (3)1624.62(8)
Z 4
Radiation typeMo K
(mm1)0.09
Crystal size (mm)0.26 0.19 0.09
 
Data collection
DiffractometerNonius KappaCCD
No. of measured, independent and observed [I > 2(I)] reflections6627, 3705, 2183
R int 0.054
(sin /)max (1)0.649
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.055, 0.127, 1.00
No. of reflections3705
No. of parameters203
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.18, 0.19

Computer programs: KappaCCD Server Software (Nonius, 1997 ▸), HKL DENZO and SCALEPACK (Otwinovski Minor, 1997 ▸), SIR2011 (Burla et al., 2012 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), SHELXL97 (Sheldrick, 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015017673/xu5872sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017673/xu5872Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017673/xu5872Isup3.cml CCDC reference: 1426237 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H21NO4F(000) = 648
Mr = 303.35Dx = 1.240 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15405 reflections
a = 7.8662 (2) Åθ = 1.0–27.5°
b = 11.4601 (3) ŵ = 0.09 mm1
c = 18.1517 (6) ÅT = 173 K
β = 96.858 (1)°Plate, red
V = 1624.62 (8) Å30.26 × 0.19 × 0.09 mm
Z = 4
Nonius KappaCCD diffractometer2183 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.054
Graphite monochromatorθmax = 27.5°, θmin = 2.3°
CCD scansh = −10→10
6627 measured reflectionsk = −14→13
3705 independent reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0534P)2 + 0.0774P] where P = (Fo2 + 2Fc2)/3
3705 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.57779 (16)0.16291 (12)0.51388 (7)0.0404 (4)
O190.65514 (15)0.45154 (13)0.40080 (8)0.0407 (4)
O30.73309 (14)0.27588 (11)0.43789 (8)0.0390 (4)
C80.2432 (2)0.50423 (15)0.40398 (10)0.0252 (4)
C10−0.0015 (2)0.63516 (16)0.37433 (10)0.0266 (4)
H10−0.11380.65450.38040.032*
O200.33160 (19)0.21986 (13)0.54631 (9)0.0584 (5)
N140.02179 (17)0.80169 (13)0.29384 (9)0.0307 (4)
C120.2607 (2)0.66959 (17)0.32158 (11)0.0317 (5)
H120.32420.71240.29100.038*
C90.0729 (2)0.53919 (16)0.40930 (10)0.0259 (4)
H90.00780.49440.43820.031*
C110.0910 (2)0.70529 (16)0.32900 (10)0.0266 (4)
C40.6131 (2)0.36263 (18)0.42864 (11)0.0310 (5)
C130.3340 (2)0.57427 (17)0.35789 (11)0.0309 (5)
H130.44650.55500.35210.037*
C70.3028 (2)0.40397 (16)0.44569 (10)0.0275 (4)
H70.21880.37450.47250.033*
C150.1135 (2)0.86883 (18)0.24297 (11)0.0386 (5)
H15A0.03110.90750.20700.046*
H15B0.18010.81590.21610.046*
C50.4505 (2)0.33863 (16)0.45730 (10)0.0292 (4)
C60.4436 (3)0.23885 (18)0.50801 (11)0.0377 (5)
C20.6814 (2)0.16029 (17)0.45458 (12)0.0363 (5)
C18−0.2946 (2)0.7988 (2)0.25955 (13)0.0473 (6)
H18A−0.27520.80570.20850.071*
H18B−0.39670.84060.26730.071*
H18C−0.30770.71800.27160.071*
C17−0.1429 (2)0.84969 (17)0.30887 (12)0.0349 (5)
H17A−0.14150.93360.30190.042*
H17B−0.15770.83480.36030.042*
C210.8427 (3)0.0962 (2)0.48418 (14)0.0551 (6)
H21A0.89670.13570.52740.083*
H21B0.91950.09430.44690.083*
H21C0.81460.01790.49710.083*
C220.5872 (3)0.1025 (2)0.38720 (12)0.0460 (6)
H22A0.55550.02470.39970.069*
H22B0.66000.09940.34840.069*
H22C0.48600.14650.37060.069*
C160.2319 (3)0.9596 (2)0.28194 (14)0.0533 (6)
H16A0.16561.01660.30470.080*
H16B0.29500.99710.24650.080*
H16C0.31020.92240.31940.080*
U11U22U33U12U13U23
O10.0464 (8)0.0385 (9)0.0367 (8)0.0179 (6)0.0058 (6)0.0069 (7)
O190.0303 (7)0.0382 (9)0.0546 (10)0.0026 (6)0.0093 (6)0.0078 (7)
O30.0274 (7)0.0354 (8)0.0538 (9)0.0093 (6)0.0033 (6)0.0008 (7)
C80.0267 (9)0.0252 (10)0.0236 (10)0.0011 (7)0.0025 (7)−0.0030 (8)
C100.0229 (9)0.0296 (11)0.0276 (10)0.0014 (7)0.0039 (7)−0.0005 (9)
O200.0643 (10)0.0510 (11)0.0666 (11)0.0218 (8)0.0352 (9)0.0286 (9)
N140.0289 (8)0.0294 (9)0.0341 (10)0.0030 (7)0.0042 (7)0.0077 (7)
C120.0287 (9)0.0320 (12)0.0357 (12)−0.0004 (8)0.0096 (8)0.0068 (9)
C90.0263 (9)0.0292 (11)0.0229 (10)−0.0026 (7)0.0058 (7)−0.0004 (8)
C110.0291 (9)0.0257 (10)0.0241 (10)0.0014 (8)−0.0003 (7)−0.0027 (8)
C40.0285 (10)0.0321 (12)0.0315 (11)0.0051 (8)0.0000 (8)−0.0043 (10)
C130.0243 (9)0.0335 (11)0.0359 (12)0.0028 (8)0.0077 (8)0.0029 (9)
C70.0292 (9)0.0266 (11)0.0279 (11)0.0007 (8)0.0082 (7)−0.0034 (9)
C150.0417 (11)0.0358 (12)0.0389 (12)0.0026 (9)0.0070 (9)0.0156 (10)
C50.0303 (9)0.0279 (11)0.0293 (11)0.0026 (8)0.0033 (7)−0.0022 (9)
C60.0430 (11)0.0346 (12)0.0364 (12)0.0103 (9)0.0086 (9)0.0034 (10)
C20.0360 (11)0.0324 (12)0.0403 (13)0.0108 (9)0.0033 (9)0.0005 (10)
C180.0347 (11)0.0472 (14)0.0580 (15)0.0033 (9)−0.0029 (10)0.0115 (12)
C170.0342 (10)0.0286 (11)0.0421 (12)0.0069 (8)0.0057 (8)0.0037 (10)
C210.0446 (12)0.0548 (16)0.0634 (17)0.0220 (11)−0.0038 (11)0.0016 (13)
C220.0522 (12)0.0397 (14)0.0441 (14)0.0123 (10)−0.0023 (10)−0.0057 (11)
C160.0518 (13)0.0419 (14)0.0670 (17)−0.0090 (10)0.0103 (11)0.0091 (12)
O1—C61.363 (2)C7—H70.9300
O1—C21.426 (2)C15—C161.514 (3)
O19—C41.201 (2)C15—H15A0.9700
O3—C41.368 (2)C15—H15B0.9700
O3—C21.429 (2)C5—C61.473 (3)
C8—C91.413 (2)C2—C221.506 (3)
C8—C131.413 (2)C2—C211.509 (3)
C8—C71.424 (2)C18—C171.519 (3)
C10—C91.366 (2)C18—H18A0.9600
C10—C111.413 (3)C18—H18B0.9600
C10—H100.9300C18—H18C0.9600
O20—C61.205 (2)C17—H17A0.9700
N14—C111.357 (2)C17—H17B0.9700
N14—C151.457 (2)C21—H21A0.9600
N14—C171.463 (2)C21—H21B0.9600
C12—C131.367 (3)C21—H21C0.9600
C12—C111.418 (2)C22—H22A0.9600
C12—H120.9300C22—H22B0.9600
C9—H90.9300C22—H22C0.9600
C4—C51.463 (2)C16—H16A0.9600
C13—H130.9300C16—H16B0.9600
C7—C51.377 (2)C16—H16C0.9600
C6—O1—C2117.50 (15)O20—C6—C5125.78 (18)
C4—O3—C2119.35 (14)O1—C6—C5117.29 (17)
C9—C8—C13115.46 (16)O1—C2—O3110.09 (15)
C9—C8—C7116.56 (16)O1—C2—C22110.63 (16)
C13—C8—C7127.97 (16)O3—C2—C22111.13 (17)
C9—C10—C11120.46 (16)O1—C2—C21105.88 (17)
C9—C10—H10119.8O3—C2—C21106.15 (16)
C11—C10—H10119.8C22—C2—C21112.74 (18)
C11—N14—C15121.78 (15)C17—C18—H18A109.5
C11—N14—C17122.20 (15)C17—C18—H18B109.5
C15—N14—C17115.86 (15)H18A—C18—H18B109.5
C13—C12—C11122.18 (17)C17—C18—H18C109.5
C13—C12—H12118.9H18A—C18—H18C109.5
C11—C12—H12118.9H18B—C18—H18C109.5
C10—C9—C8123.61 (16)N14—C17—C18113.34 (17)
C10—C9—H9118.2N14—C17—H17A108.9
C8—C9—H9118.2C18—C17—H17A108.9
N14—C11—C10122.12 (16)N14—C17—H17B108.9
N14—C11—C12121.31 (16)C18—C17—H17B108.9
C10—C11—C12116.57 (16)H17A—C17—H17B107.7
O19—C4—O3116.57 (16)C2—C21—H21A109.5
O19—C4—C5127.27 (17)C2—C21—H21B109.5
O3—C4—C5116.09 (17)H21A—C21—H21B109.5
C12—C13—C8121.68 (16)C2—C21—H21C109.5
C12—C13—H13119.2H21A—C21—H21C109.5
C8—C13—H13119.2H21B—C21—H21C109.5
C5—C7—C8137.58 (17)C2—C22—H22A109.5
C5—C7—H7111.2C2—C22—H22B109.5
C8—C7—H7111.2H22A—C22—H22B109.5
N14—C15—C16112.95 (18)C2—C22—H22C109.5
N14—C15—H15A109.0H22A—C22—H22C109.5
C16—C15—H15A109.0H22B—C22—H22C109.5
N14—C15—H15B109.0C15—C16—H16A109.5
C16—C15—H15B109.0C15—C16—H16B109.5
H15A—C15—H15B107.8H16A—C16—H16B109.5
C7—C5—C4126.92 (18)C15—C16—H16C109.5
C7—C5—C6115.10 (16)H16A—C16—H16C109.5
C4—C5—C6117.86 (16)H16B—C16—H16C109.5
O20—C6—O1116.90 (18)
C11—C10—C9—C80.8 (3)C8—C7—C5—C44.4 (4)
C13—C8—C9—C10−1.4 (3)C8—C7—C5—C6−179.8 (2)
C7—C8—C9—C10178.19 (17)O19—C4—C5—C713.2 (3)
C15—N14—C11—C10−175.52 (17)O3—C4—C5—C7−170.14 (18)
C17—N14—C11—C109.3 (3)O19—C4—C5—C6−162.49 (19)
C15—N14—C11—C124.1 (3)O3—C4—C5—C614.2 (2)
C17—N14—C11—C12−171.03 (17)C2—O1—C6—O20160.50 (19)
C9—C10—C11—N14−179.51 (17)C2—O1—C6—C5−21.3 (2)
C9—C10—C11—C120.8 (3)C7—C5—C6—O20−10.3 (3)
C13—C12—C11—N14178.48 (18)C4—C5—C6—O20166.0 (2)
C13—C12—C11—C10−1.8 (3)C7—C5—C6—O1171.75 (17)
C2—O3—C4—O19−165.89 (17)C4—C5—C6—O1−12.0 (3)
C2—O3—C4—C517.1 (2)C6—O1—C2—O350.5 (2)
C11—C12—C13—C81.3 (3)C6—O1—C2—C22−72.7 (2)
C9—C8—C13—C120.4 (3)C6—O1—C2—C21164.84 (18)
C7—C8—C13—C12−179.18 (18)C4—O3—C2—O1−48.8 (2)
C9—C8—C7—C5179.1 (2)C4—O3—C2—C2274.2 (2)
C13—C8—C7—C5−1.4 (4)C4—O3—C2—C21−162.94 (17)
C11—N14—C15—C16−85.9 (2)C11—N14—C17—C18−89.7 (2)
C17—N14—C15—C1689.6 (2)C15—N14—C17—C1894.8 (2)
D—H···AD—HH···AD···AD—H···A
C13—H13···O190.932.132.915 (2)141
C17—H17B···O20i0.972.393.268 (3)151
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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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