Literature DB >> 21523094

3-(4-Bromo-benzyl-idene)-1,5-dioxaspiro-[5.5]undecane-2,4-dione.

Wu-Lan Zeng1.   

Abstract

The title mol-ecule, C(16)H(15)BrO(4), was prepared by the reaction of (R)-2,4-dioxo-1,5-dioxaspiro-[5.5]undecane and 4-bromo-benzaldehyde with ethanol. The 1,3-dioxane ring exhibits a distorted boat and the fused cyclo-hexane ring exhibits a chair conformation.

Entities:  

Year:  2011        PMID: 21523094      PMCID: PMC3051531          DOI: 10.1107/S1600536811001516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For puckering parameters, see: Cremer & Pople (1975 ▶). For background information and related structures, see: Zeng & Jian (2009 ▶); Zeng et al. (2009 ▶).

Experimental

Crystal data

C16H15BrO4 M = 351.18 Orthorhombic, a = 6.6008 (13) Å b = 16.784 (3) Å c = 13.424 (3) Å V = 1487.2 (5) Å3 Z = 4 Mo Kα radiation μ = 2.78 mm−1 T = 293 K 0.18 × 0.12 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer 12420 measured reflections 3243 independent reflections 2042 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.124 S = 0.93 3243 reflections 191 parameters 2 restraints H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.34 e Å−3 Absolute structure: Flack (1983 ▶), 1459 Friedel pairs Flack parameter: −0.033 (13) Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001516/si2324sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001516/si2324Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15BrO4F(000) = 712
Mr = 351.18Dx = 1.568 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 2042 reflections
a = 6.6008 (13) Åθ = 3.0–27.5°
b = 16.784 (3) ŵ = 2.78 mm1
c = 13.424 (3) ÅT = 293 K
V = 1487.2 (5) Å3Block, yellow
Z = 40.18 × 0.12 × 0.10 mm
Bruker SMART CCD area-detector diffractometer2042 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.065
graphiteθmax = 27.5°, θmin = 3.0°
φ and ω scansh = −8→8
12420 measured reflectionsk = −21→21
3243 independent reflectionsl = −17→17
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0603P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.124(Δ/σ)max < 0.001
S = 0.93Δρmax = 0.31 e Å3
3243 reflectionsΔρmin = −0.34 e Å3
191 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.0088 (18)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1459 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.033 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.30705 (7)0.16937 (3)0.44191 (6)0.0845 (2)
O40.3239 (4)0.18964 (18)−0.1213 (2)0.0495 (7)
C80.2952 (5)0.1895 (3)−0.0213 (4)0.0474 (9)
C100.5373 (7)0.0731 (3)−0.0208 (4)0.0683 (13)
O30.5363 (4)0.07733 (19)−0.1204 (2)0.0628 (8)
O20.2192 (4)0.24707 (17)0.0163 (3)0.0565 (7)
C70.3358 (7)0.0974 (3)0.1252 (4)0.0625 (11)
H7A0.42140.05770.14900.075*
C40.1814 (6)0.1207 (3)0.1977 (4)0.0562 (11)
C90.3812 (7)0.1202 (3)0.0332 (4)0.0574 (11)
C120.3662 (6)0.1150 (2)−0.1684 (4)0.0504 (10)
C6−0.1475 (7)0.1696 (3)0.2454 (5)0.0654 (13)
H6A−0.27120.19200.22770.079*
C5−0.0046 (7)0.1545 (2)0.1731 (4)0.0626 (11)
H5A−0.03270.16700.10710.075*
C1−0.1088 (7)0.1517 (2)0.3444 (3)0.0569 (10)
C130.4385 (7)0.1343 (3)−0.2731 (4)0.0669 (13)
H13A0.54850.1725−0.26970.080*
H13B0.48980.0862−0.30430.080*
C110.1829 (5)0.0624 (2)−0.1692 (3)0.0540 (10)
H11A0.13660.0539−0.10150.065*
H11B0.21820.0110−0.19730.065*
O10.6638 (6)0.0322 (3)0.0197 (3)0.0997 (14)
C30.2160 (7)0.1015 (3)0.2968 (4)0.0635 (12)
H3A0.33780.07750.31430.076*
C20.0755 (7)0.1171 (3)0.3698 (4)0.0690 (12)
H2A0.10360.10460.43580.083*
C160.0131 (6)0.0998 (3)−0.2304 (4)0.0694 (13)
H16A−0.10280.0643−0.23160.083*
H16B−0.02870.1495−0.19970.083*
C140.2691 (10)0.1683 (3)−0.3360 (5)0.0853 (18)
H14A0.31590.1742−0.40410.102*
H14B0.23340.2207−0.31120.102*
C150.0829 (9)0.1154 (4)−0.3347 (4)0.0873 (17)
H15A−0.02520.1409−0.37190.105*
H15B0.11400.0651−0.36700.105*
U11U22U33U12U13U23
Br10.0827 (3)0.0985 (4)0.0723 (4)0.0064 (2)−0.0037 (3)−0.0060 (3)
O40.0564 (16)0.0396 (14)0.0526 (15)0.0002 (11)−0.0015 (12)0.0001 (14)
C80.046 (2)0.043 (2)0.0540 (17)0.0020 (15)−0.0062 (16)−0.0023 (18)
C100.062 (2)0.057 (3)0.086 (4)0.020 (2)−0.009 (2)−0.007 (2)
O30.0540 (16)0.0653 (19)0.069 (2)0.0174 (14)−0.0026 (15)0.0004 (17)
O20.0606 (15)0.0474 (16)0.0615 (17)0.0070 (12)−0.0094 (14)−0.0046 (14)
C70.069 (3)0.055 (3)0.064 (3)0.0137 (19)−0.015 (2)0.001 (2)
C40.064 (3)0.049 (2)0.056 (3)0.0003 (18)−0.015 (2)0.0050 (19)
C90.052 (2)0.049 (2)0.072 (3)0.006 (2)−0.014 (2)0.001 (2)
C120.0482 (18)0.040 (2)0.063 (3)0.0070 (16)−0.0009 (19)−0.005 (2)
C60.058 (2)0.056 (3)0.083 (4)−0.0011 (18)−0.019 (3)0.010 (2)
C50.063 (2)0.065 (3)0.060 (3)−0.0008 (19)−0.013 (2)0.016 (2)
C10.070 (2)0.052 (2)0.049 (2)−0.0062 (18)−0.011 (2)0.0021 (19)
C130.075 (3)0.059 (3)0.067 (3)0.010 (2)0.019 (2)0.007 (2)
C110.057 (2)0.045 (2)0.060 (3)−0.0001 (15)−0.0026 (18)−0.004 (2)
O10.095 (2)0.111 (3)0.093 (3)0.059 (2)−0.022 (2)0.002 (2)
C30.070 (3)0.063 (3)0.057 (3)0.012 (2)−0.017 (2)0.002 (2)
C20.083 (3)0.061 (3)0.063 (3)0.002 (2)−0.029 (3)−0.002 (2)
C160.058 (2)0.074 (3)0.076 (4)0.005 (2)−0.009 (2)−0.016 (3)
C140.111 (4)0.091 (4)0.054 (3)0.040 (3)0.020 (3)0.016 (3)
C150.091 (4)0.112 (4)0.059 (3)0.031 (3)−0.014 (3)−0.017 (3)
Br1—C11.875 (5)C5—H5A0.9300
O4—C81.355 (5)C1—C21.391 (6)
O4—C121.431 (5)C13—C141.513 (8)
C8—O21.201 (5)C13—H13A0.9700
C8—C91.487 (6)C13—H13B0.9700
C10—O11.210 (6)C11—C161.525 (6)
C10—O31.338 (6)C11—H11A0.9700
C10—C91.487 (7)C11—H11B0.9700
O3—C121.441 (5)C3—C21.374 (7)
C7—C91.328 (7)C3—H3A0.9300
C7—C41.462 (7)C2—H2A0.9300
C7—H7A0.9300C16—C151.497 (7)
C4—C31.387 (6)C16—H16A0.9700
C4—C51.392 (6)C16—H16B0.9700
C12—C111.498 (6)C14—C151.517 (9)
C12—C131.520 (6)C14—H14A0.9700
C6—C51.377 (8)C14—H14B0.9700
C6—C11.385 (7)C15—H15A0.9700
C6—H6A0.9300C15—H15B0.9700
C8—O4—C12117.6 (4)C12—C13—H13A109.3
O2—C8—O4118.3 (4)C14—C13—H13B109.3
O2—C8—C9125.6 (5)C12—C13—H13B109.3
O4—C8—C9115.8 (4)H13A—C13—H13B108.0
O1—C10—O3118.8 (5)C12—C11—C16110.8 (4)
O1—C10—C9124.1 (5)C12—C11—H11A109.5
O3—C10—C9117.1 (4)C16—C11—H11A109.5
C10—O3—C12118.3 (4)C12—C11—H11B109.5
C9—C7—C4134.4 (4)C16—C11—H11B109.5
C9—C7—H7A112.8H11A—C11—H11B108.1
C4—C7—H7A112.8C2—C3—C4121.9 (4)
C3—C4—C5117.8 (5)C2—C3—H3A119.0
C3—C4—C7117.5 (4)C4—C3—H3A119.0
C5—C4—C7124.5 (5)C3—C2—C1119.7 (5)
C7—C9—C10117.2 (4)C3—C2—H2A120.2
C7—C9—C8126.7 (4)C1—C2—H2A120.2
C10—C9—C8116.1 (5)C15—C16—C11110.4 (4)
O4—C12—O3109.8 (3)C15—C16—H16A109.6
O4—C12—C11111.2 (3)C11—C16—H16A109.6
O3—C12—C11112.0 (3)C15—C16—H16B109.6
O4—C12—C13106.5 (3)C11—C16—H16B109.6
O3—C12—C13105.2 (3)H16A—C16—H16B108.1
C11—C12—C13111.8 (4)C13—C14—C15111.8 (4)
C5—C6—C1120.6 (4)C13—C14—H14A109.3
C5—C6—H6A119.7C15—C14—H14A109.3
C1—C6—H6A119.7C13—C14—H14B109.3
C6—C5—C4120.8 (5)C15—C14—H14B109.3
C6—C5—H5A119.6H14A—C14—H14B107.9
C4—C5—H5A119.6C16—C15—C14111.3 (4)
C6—C1—C2119.1 (5)C16—C15—H15A109.4
C6—C1—Br1120.4 (4)C14—C15—H15A109.4
C2—C1—Br1120.4 (4)C16—C15—H15B109.4
C14—C13—C12111.4 (4)C14—C15—H15B109.4
C14—C13—H13A109.3H15A—C15—H15B108.0
D—H···AD—HH···AD···AD—H···A
C5—H5A···O20.932.453.004 (2)117
C7—H7A···O10.932.402.812 (2)106
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-(2-Furylmethyl-ene)-1,5-dioxaspiro-[5.5]undecane-2,4-dione.

Authors:  Wu-Lan Zeng; Fang-Fang Jian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

3.  3-[(5-Methyl-furan-2-yl)methyl-ene]-1,5-dioxaspiro-[5.5]undecane-2,4-dione.

Authors:  Wu-Lan Zeng; Hua-Xiang Zhang; Fang-Fang Jian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  3-(2,4-Dichloro-benzyl-idene)-1,5-dioxa-spiro-[5.5]undecane-2,4-dione.

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

2.  Crystal structure of 5-[4-(di-ethyl-amino)-benzyl-idene]-2,2-dimethyl-1,3-dioxane-4,6-dione.

Authors:  Egija Stepina; Dmitrijs Stepanovs; Inese Mierina; Mara Jure
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-26
  2 in total

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