Literature DB >> 21588666

5-(4-Hy-droxy-benzyl-idene)-2,2-dimethyl-1,3-dioxane-4,6-dione.

Wu-Lan Zeng1.   

Abstract

The title compound, C(13)H(12)O(5), was prepared by the reaction of 2,2-dimethyl-1,3-dioxane-4,6-dione and 4-hy-droxy-benz-alde-hyde in ethanol. The 1,3-dioxane ring is in a distorted boat conformation. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R(2) (2)(20) rings.

Entities:  

Year:  2010        PMID: 21588666      PMCID: PMC3007919          DOI: 10.1107/S1600536810032149

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Zeng & Jian (2009 ▶).

Experimental

Crystal data

C13H12O5 M = 248.23 Monoclinic, a = 13.900 (3) Å b = 10.249 (2) Å c = 8.1357 (16) Å β = 94.47 (3)° V = 1155.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.20 × 0.16 × 0.11 mm

Data collection

Bruker SMART CCD diffractometer 10923 measured reflections 2644 independent reflections 2402 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.116 S = 1.05 2644 reflections 163 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810032149/hb5605sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032149/hb5605Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12O5F(000) = 520
Mr = 248.23Dx = 1.427 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2644 reflections
a = 13.900 (3) Åθ = 3.2–27.5°
b = 10.249 (2) ŵ = 0.11 mm1
c = 8.1357 (16) ÅT = 293 K
β = 94.47 (3)°Block, yellow
V = 1155.5 (4) Å30.20 × 0.16 × 0.11 mm
Z = 4
Bruker SMART CCD diffractometer2402 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.035
graphiteθmax = 27.5°, θmin = 3.2°
phi and ω scansh = −17→18
10923 measured reflectionsk = −13→13
2644 independent reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0685P)2 + 0.2332P] where P = (Fo2 + 2Fc2)/3
2644 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.41524 (6)0.57554 (9)0.12495 (11)0.0401 (2)
O30.35540 (6)0.47383 (10)0.35423 (10)0.0409 (2)
O20.21646 (6)0.52747 (11)0.44151 (11)0.0468 (3)
O5−0.22815 (6)0.59477 (10)0.25091 (12)0.0468 (3)
H5A−0.23230.56000.34080.070*
C70.15802 (8)0.63304 (11)0.10210 (14)0.0317 (2)
H7A0.16170.68300.00740.038*
C11−0.13455 (8)0.59747 (11)0.21578 (14)0.0316 (2)
C80.05963 (8)0.61437 (10)0.14540 (13)0.0288 (2)
C130.02894 (8)0.52087 (11)0.25578 (14)0.0313 (2)
H13A0.07390.46380.30700.038*
C12−0.06604 (8)0.51181 (11)0.28980 (14)0.0320 (3)
H12A−0.08480.44830.36250.038*
O10.32758 (7)0.71114 (11)−0.03290 (14)0.0580 (3)
C50.26819 (8)0.52924 (12)0.32898 (14)0.0337 (3)
C60.24587 (8)0.59391 (11)0.16895 (14)0.0318 (2)
C9−0.01161 (8)0.69363 (11)0.06446 (14)0.0337 (3)
H9A0.00600.7520−0.01550.040*
C10−0.10703 (8)0.68732 (11)0.10023 (15)0.0355 (3)
H10A−0.15250.74280.04740.043*
C40.32958 (9)0.63232 (12)0.07624 (15)0.0373 (3)
C30.41508 (8)0.45675 (13)0.21746 (14)0.0366 (3)
C20.51631 (10)0.43795 (19)0.29247 (18)0.0544 (4)
H2A0.53510.51220.35940.082*
H2B0.55930.42890.20640.082*
H2C0.51920.36080.35950.082*
C10.37811 (12)0.34509 (14)0.11015 (19)0.0525 (4)
H1A0.31330.36330.06690.079*
H1B0.37890.26650.17440.079*
H1C0.41860.33430.02070.079*
U11U22U33U12U13U23
O40.0294 (4)0.0477 (5)0.0443 (5)−0.0016 (3)0.0091 (3)0.0076 (4)
O30.0317 (4)0.0625 (6)0.0287 (4)0.0045 (4)0.0036 (3)0.0062 (4)
O20.0318 (4)0.0783 (7)0.0309 (4)−0.0035 (4)0.0067 (3)0.0073 (4)
O50.0273 (4)0.0666 (6)0.0468 (5)0.0088 (4)0.0051 (4)0.0100 (5)
C70.0339 (6)0.0314 (5)0.0302 (5)−0.0014 (4)0.0052 (4)0.0013 (4)
C110.0270 (5)0.0372 (6)0.0303 (5)0.0024 (4)0.0003 (4)−0.0045 (4)
C80.0290 (5)0.0293 (5)0.0281 (5)−0.0001 (4)0.0015 (4)−0.0026 (4)
C130.0286 (5)0.0316 (5)0.0334 (5)0.0038 (4)0.0007 (4)0.0037 (4)
C120.0310 (5)0.0352 (5)0.0299 (5)0.0005 (4)0.0026 (4)0.0039 (4)
O10.0496 (6)0.0612 (6)0.0660 (7)0.0073 (5)0.0224 (5)0.0309 (5)
C50.0273 (5)0.0443 (6)0.0294 (5)−0.0052 (4)0.0025 (4)0.0005 (4)
C60.0298 (5)0.0360 (5)0.0301 (5)−0.0023 (4)0.0063 (4)0.0010 (4)
C90.0365 (6)0.0311 (5)0.0327 (5)−0.0015 (4)−0.0015 (4)0.0038 (4)
C100.0334 (6)0.0347 (6)0.0373 (6)0.0052 (4)−0.0047 (4)0.0032 (5)
C40.0332 (6)0.0393 (6)0.0406 (6)−0.0009 (4)0.0100 (5)0.0050 (5)
C30.0326 (6)0.0481 (7)0.0297 (5)0.0031 (5)0.0051 (4)0.0032 (5)
C20.0337 (6)0.0894 (11)0.0402 (7)0.0138 (7)0.0031 (5)0.0039 (7)
C10.0594 (9)0.0470 (8)0.0511 (8)−0.0002 (6)0.0036 (7)−0.0049 (6)
O4—C41.3564 (15)C12—H12A0.9300
O4—C31.4314 (15)O1—C41.1991 (15)
O3—C51.3399 (15)C5—C61.4722 (16)
O3—C31.4493 (14)C6—C41.4882 (16)
O2—C51.2076 (15)C9—C101.3814 (17)
O5—C111.3539 (14)C9—H9A0.9300
O5—H5A0.8200C10—H10A0.9300
C7—C61.3580 (16)C3—C21.5019 (17)
C7—C81.4513 (15)C3—C11.5053 (19)
C7—H7A0.9300C2—H2A0.9600
C11—C101.3907 (17)C2—H2B0.9600
C11—C121.3968 (16)C2—H2C0.9600
C8—C131.4023 (15)C1—H1A0.9600
C8—C91.4044 (15)C1—H1B0.9600
C13—C121.3730 (16)C1—H1C0.9600
C13—H13A0.9300
C4—O4—C3118.76 (9)C8—C9—H9A119.1
C5—O3—C3119.91 (9)C9—C10—C11119.52 (10)
C11—O5—H5A109.5C9—C10—H10A120.2
C6—C7—C8134.33 (10)C11—C10—H10A120.2
C6—C7—H7A112.8O1—C4—O4118.33 (11)
C8—C7—H7A112.8O1—C4—C6125.42 (12)
O5—C11—C10118.41 (10)O4—C4—C6116.21 (10)
O5—C11—C12122.02 (11)O4—C3—O3108.99 (10)
C10—C11—C12119.56 (10)O4—C3—C2106.43 (11)
C13—C8—C9117.19 (10)O3—C3—C2106.12 (10)
C13—C8—C7125.81 (10)O4—C3—C1110.86 (10)
C9—C8—C7116.95 (10)O3—C3—C1110.31 (11)
C12—C13—C8121.38 (10)C2—C3—C1113.88 (13)
C12—C13—H13A119.3C3—C2—H2A109.5
C8—C13—H13A119.3C3—C2—H2B109.5
C13—C12—C11120.30 (10)H2A—C2—H2B109.5
C13—C12—H12A119.9C3—C2—H2C109.5
C11—C12—H12A119.9H2A—C2—H2C109.5
O2—C5—O3117.55 (11)H2B—C2—H2C109.5
O2—C5—C6125.47 (11)C3—C1—H1A109.5
O3—C5—C6116.88 (10)C3—C1—H1B109.5
C7—C6—C5127.45 (10)H1A—C1—H1B109.5
C7—C6—C4115.66 (10)C3—C1—H1C109.5
C5—C6—C4116.62 (10)H1A—C1—H1C109.5
C10—C9—C8121.84 (10)H1B—C1—H1C109.5
C10—C9—H9A119.1
D—H···AD—HH···AD···AD—H···A
O5—H5A···O2i0.821.982.7919 (14)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O2i0.821.982.7919 (14)170

Symmetry code: (i) .

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