Literature DB >> 23476434

2,2-Dimethyl-5-(2-nitro-benzyl-idene)-1,3-dioxane-4,6-dione.

Fernando García-Álvarez1, Nancy Romero, Carlos E Lobato-García, Joel L Terán, Angel Mendoza.   

Abstract

The asymmetric unit of the title compound, C13H11NO6, contains two mol-ecules in both of which the six-membered 1,3-dioxane-4,6-dione ring shows a screw-boat conformation. The dihedral angles between the best planes through the six-membered rings are 47.8 (2) and 49.8 (2)°. In the crystal, C-H⋯O inter-actions link the mol-ecules, building a supramolecular sheet parallel to the c axis.

Entities:  

Year:  2012        PMID: 23476434      PMCID: PMC3588381          DOI: 10.1107/S1600536812049677

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general applications of Meldrum’s acid, see: Palasz et al. (2007 ▶); Fillion et al. (2006 ▶); Mizukami et al. (1993 ▶). For the synthesis of heterocyclic compounds, see: Scott & Raston (2000 ▶); Alvim et al. (2005 ▶); Fillion & Dumas (2008 ▶). For combinatorial synthesis, see: Shaabani et al. (2004 ▶); Wang et al. (2007 ▶); Cochard et al. (2004 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For NMR data, see: Bigi et al. (2001 ▶).

Experimental

Crystal data

C13H11NO6 M = 277.23 Triclinic, a = 10.0240 (4) Å b = 10.4830 (5) Å c = 12.4076 (5) Å α = 105.385 (4)° β = 94.669 (3)° γ = 93.096 (3)° V = 1249.03 (10) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 130 K 0.39 × 0.22 × 0.14 mm

Data collection

Oxford Diffraction Xcalibur (Atlas, Gemini) diffractometer Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.968, T max = 0.985 8703 measured reflections 4526 independent reflections 3902 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.088 S = 1.03 4526 reflections 365 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049677/bt6875sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049677/bt6875Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049677/bt6875Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11NO6Z = 4
Mr = 277.23F(000) = 576
Triclinic, P1Dx = 1.474 Mg m3
a = 10.0240 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.4830 (5) ÅCell parameters from 5470 reflections
c = 12.4076 (5) Åθ = 3.4–25.2°
α = 105.385 (4)°µ = 0.12 mm1
β = 94.669 (3)°T = 130 K
γ = 93.096 (3)°Prism, colorless
V = 1249.03 (10) Å30.39 × 0.22 × 0.14 mm
Oxford Diffraction Xcalibur (Atlas, Gemini) diffractometer4526 independent reflections
Graphite monochromator3902 reflections with I > 2σ(I)
Detector resolution: 10.4685 pixels mm-1Rint = 0.018
ω scansθmax = 25.3°, θmin = 3.4°
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009)h = −12→12
Tmin = 0.968, Tmax = 0.985k = −10→12
8703 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0397P)2 + 0.3347P] where P = (Fo2 + 2Fc2)/3
4526 reflections(Δ/σ)max < 0.001
365 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.61144 (10)0.10481 (11)0.54216 (9)0.0347 (3)
O20.53572 (11)0.09437 (10)0.69780 (9)0.0351 (3)
O60.23911 (10)0.16149 (11)0.32752 (8)0.0334 (3)
O50.68803 (9)0.16562 (11)0.25320 (8)0.0293 (2)
O30.29864 (9)0.16222 (10)0.16040 (8)0.0260 (2)
O40.52511 (9)0.16412 (10)0.12250 (8)0.0255 (2)
N10.54108 (11)0.14413 (11)0.61912 (10)0.0241 (3)
C20.44468 (13)0.30112 (13)0.52086 (11)0.0203 (3)
C10.46117 (13)0.25651 (13)0.61755 (11)0.0203 (3)
C130.40048 (14)0.31165 (14)0.71352 (11)0.0240 (3)
H80.41370.27930.77620.029*
C120.32022 (14)0.41500 (14)0.71558 (12)0.0264 (3)
H90.28030.45430.78010.032*
C110.29991 (14)0.45936 (14)0.62034 (12)0.0263 (3)
H100.24460.52790.62070.032*
C100.36058 (13)0.40341 (14)0.52468 (12)0.0243 (3)
H110.3450.43470.46160.029*
C30.51994 (13)0.25533 (13)0.42226 (11)0.0215 (3)
H70.61260.25770.43710.026*
C40.47179 (13)0.21081 (13)0.31422 (11)0.0209 (3)
C50.32781 (14)0.17904 (14)0.27213 (12)0.0241 (3)
C70.57212 (13)0.18052 (14)0.23029 (11)0.0222 (3)
C60.39619 (13)0.21135 (15)0.09837 (12)0.0243 (3)
C80.35526 (15)0.14531 (17)−0.02350 (12)0.0330 (4)
H10.27190.1764−0.04580.05*
H20.34440.0509−0.03510.05*
H30.42330.1663−0.06760.05*
C90.40534 (15)0.36051 (15)0.12822 (13)0.0302 (3)
H40.31970.38990.10910.045*
H50.47160.39120.08720.045*
H60.43060.39570.20740.045*
O70.21049 (10)0.63351 (11)0.34639 (9)0.0367 (3)
O80.12315 (15)0.64061 (17)0.49838 (11)0.0703 (5)
O11−0.11562 (10)0.62735 (10)0.09585 (9)0.0305 (2)
O120.33877 (10)0.68213 (12)0.06066 (9)0.0380 (3)
O10−0.04438 (9)0.64388 (9)−0.06351 (8)0.0235 (2)
O90.18763 (9)0.66645 (9)−0.08312 (8)0.0230 (2)
N20.12876 (12)0.67424 (13)0.41284 (10)0.0297 (3)
C150.04065 (13)0.81061 (14)0.29236 (11)0.0236 (3)
C23−0.05066 (14)0.90041 (15)0.27642 (12)0.0282 (3)
H22−0.04970.93180.21310.034*
C24−0.14323 (14)0.94452 (15)0.35226 (13)0.0291 (3)
H21−0.20311.00490.33950.035*
C25−0.14677 (14)0.89901 (14)0.44700 (12)0.0267 (3)
H20−0.20910.92850.49780.032*
C26−0.05768 (14)0.80991 (14)0.46575 (11)0.0246 (3)
H19−0.05960.77820.52890.029*
C140.03491 (13)0.76803 (13)0.38935 (11)0.0218 (3)
C160.14020 (14)0.77088 (15)0.21051 (12)0.0263 (3)
H180.23040.78940.23750.032*
C170.11190 (13)0.71080 (14)0.10134 (12)0.0232 (3)
C180.22400 (14)0.68726 (14)0.02790 (12)0.0256 (3)
C20−0.02527 (13)0.65966 (13)0.04834 (11)0.0220 (3)
C190.05674 (13)0.70168 (14)−0.11726 (11)0.0223 (3)
C210.05316 (14)0.85027 (14)−0.08805 (12)0.0265 (3)
H12−0.03390.8722−0.11250.04*
H130.12020.8868−0.12490.04*
H140.07090.8865−0.00820.04*
C220.02837 (15)0.63545 (16)−0.24028 (12)0.0321 (4)
H15−0.06180.6486−0.26510.048*
H160.03850.5421−0.25390.048*
H170.09020.6731−0.28080.048*
U11U22U33U12U13U23
O10.0352 (6)0.0324 (6)0.0391 (6)0.0151 (5)0.0113 (5)0.0096 (5)
O20.0461 (7)0.0304 (6)0.0325 (6)0.0077 (5)−0.0012 (5)0.0158 (5)
O60.0196 (5)0.0511 (7)0.0312 (6)0.0000 (5)0.0079 (4)0.0131 (5)
O50.0189 (5)0.0423 (6)0.0304 (6)0.0084 (5)0.0056 (4)0.0143 (5)
O30.0199 (5)0.0345 (6)0.0234 (5)−0.0002 (4)0.0016 (4)0.0084 (4)
O40.0213 (5)0.0358 (6)0.0218 (5)0.0085 (4)0.0049 (4)0.0097 (4)
N10.0233 (6)0.0215 (6)0.0259 (7)0.0011 (5)−0.0038 (5)0.0056 (5)
C20.0161 (6)0.0212 (7)0.0232 (7)−0.0007 (5)0.0007 (5)0.0059 (6)
C10.0171 (7)0.0173 (7)0.0252 (7)−0.0004 (5)−0.0016 (5)0.0050 (5)
C130.0264 (7)0.0248 (7)0.0208 (7)−0.0013 (6)0.0008 (6)0.0072 (6)
C120.0267 (8)0.0246 (7)0.0262 (8)0.0015 (6)0.0084 (6)0.0026 (6)
C110.0238 (7)0.0232 (7)0.0332 (8)0.0067 (6)0.0070 (6)0.0075 (6)
C100.0226 (7)0.0270 (8)0.0264 (8)0.0038 (6)0.0034 (6)0.0121 (6)
C30.0171 (7)0.0225 (7)0.0274 (8)0.0032 (6)0.0035 (5)0.0105 (6)
C40.0188 (7)0.0222 (7)0.0244 (7)0.0039 (6)0.0047 (5)0.0098 (6)
C50.0212 (7)0.0260 (8)0.0259 (8)0.0044 (6)0.0037 (6)0.0076 (6)
C70.0219 (7)0.0232 (7)0.0231 (7)0.0028 (6)0.0042 (6)0.0084 (6)
C60.0164 (7)0.0332 (8)0.0259 (8)0.0042 (6)0.0038 (5)0.0116 (6)
C80.0300 (8)0.0439 (10)0.0249 (8)0.0053 (7)0.0005 (6)0.0091 (7)
C90.0273 (8)0.0311 (8)0.0343 (9)0.0036 (7)0.0014 (6)0.0126 (7)
O70.0308 (6)0.0402 (7)0.0411 (7)0.0121 (5)0.0056 (5)0.0124 (5)
O80.0808 (10)0.1092 (13)0.0500 (9)0.0550 (10)0.0230 (7)0.0579 (9)
O110.0240 (5)0.0348 (6)0.0374 (6)−0.0012 (5)0.0082 (4)0.0173 (5)
O120.0183 (5)0.0609 (8)0.0386 (6)0.0095 (5)0.0038 (4)0.0185 (6)
O100.0185 (5)0.0263 (5)0.0243 (5)−0.0002 (4)0.0039 (4)0.0045 (4)
O90.0186 (5)0.0264 (5)0.0246 (5)0.0066 (4)0.0055 (4)0.0061 (4)
N20.0281 (7)0.0360 (7)0.0262 (7)0.0032 (6)−0.0032 (5)0.0120 (6)
C150.0199 (7)0.0275 (8)0.0230 (7)−0.0015 (6)−0.0011 (5)0.0077 (6)
C230.0289 (8)0.0315 (8)0.0282 (8)0.0021 (6)0.0000 (6)0.0158 (6)
C240.0250 (8)0.0255 (8)0.0363 (9)0.0039 (6)−0.0005 (6)0.0080 (6)
C250.0214 (7)0.0265 (8)0.0289 (8)−0.0022 (6)0.0031 (6)0.0023 (6)
C260.0245 (7)0.0282 (8)0.0202 (7)−0.0054 (6)−0.0004 (5)0.0074 (6)
C140.0192 (7)0.0234 (7)0.0220 (7)−0.0007 (6)−0.0044 (5)0.0069 (6)
C160.0203 (7)0.0346 (8)0.0275 (8)0.0028 (6)0.0009 (6)0.0149 (6)
C170.0190 (7)0.0266 (7)0.0279 (8)0.0044 (6)0.0049 (6)0.0131 (6)
C180.0215 (8)0.0282 (8)0.0293 (8)0.0037 (6)0.0048 (6)0.0103 (6)
C200.0217 (7)0.0189 (7)0.0276 (8)0.0058 (6)0.0051 (6)0.0084 (6)
C190.0163 (7)0.0279 (8)0.0239 (7)0.0040 (6)0.0054 (5)0.0078 (6)
C210.0263 (8)0.0278 (8)0.0285 (8)0.0071 (6)0.0073 (6)0.0106 (6)
C220.0259 (8)0.0423 (9)0.0253 (8)0.0048 (7)0.0044 (6)0.0031 (7)
O1—N11.2293 (15)O7—N21.2223 (15)
O2—N11.2263 (15)O8—N21.2083 (16)
O6—C51.2024 (16)O11—C201.2009 (16)
O5—C71.2018 (16)O12—C181.1974 (17)
O3—C51.3554 (17)O10—C201.3497 (16)
O3—C61.4464 (16)O10—C191.4482 (16)
O4—C71.3442 (16)O9—C181.3521 (17)
O4—C61.4455 (16)O9—C191.4430 (16)
N1—C11.4634 (17)N2—C141.4642 (18)
C2—C101.3928 (19)C15—C231.388 (2)
C2—C11.3996 (19)C15—C141.3944 (19)
C2—C31.4745 (18)C15—C161.4785 (19)
C1—C131.3830 (19)C23—C241.385 (2)
C13—C121.380 (2)C23—H220.93
C13—H80.93C24—C251.383 (2)
C12—C111.385 (2)C24—H210.93
C12—H90.93C25—C261.377 (2)
C11—C101.3818 (19)C25—H200.93
C11—H100.93C26—C141.3853 (19)
C10—H110.93C26—H190.93
C3—C41.3364 (19)C16—C171.333 (2)
C3—H70.93C16—H180.93
C4—C51.4831 (19)C17—C201.4820 (19)
C4—C71.4921 (18)C17—C181.4938 (19)
C6—C81.499 (2)C19—C221.4961 (19)
C6—C91.504 (2)C19—C211.506 (2)
C8—H10.96C21—H120.96
C8—H20.96C21—H130.96
C8—H30.96C21—H140.96
C9—H40.96C22—H150.96
C9—H50.96C22—H160.96
C9—H60.96C22—H170.96
C5—O3—C6119.09 (10)C20—O10—C19118.89 (10)
C7—O4—C6118.75 (10)C18—O9—C19118.26 (10)
O2—N1—O1123.04 (12)O8—N2—O7122.23 (13)
O2—N1—C1118.41 (11)O8—N2—C14118.42 (12)
O1—N1—C1118.54 (11)O7—N2—C14119.35 (12)
C10—C2—C1116.46 (12)C23—C15—C14116.39 (13)
C10—C2—C3119.36 (12)C23—C15—C16119.29 (12)
C1—C2—C3123.91 (12)C14—C15—C16124.26 (13)
C13—C1—C2122.65 (12)C24—C23—C15121.82 (13)
C13—C1—N1116.92 (12)C24—C23—H22119.1
C2—C1—N1120.40 (12)C15—C23—H22119.1
C12—C13—C1119.50 (13)C25—C24—C23120.14 (14)
C12—C13—H8120.3C25—C24—H21119.9
C1—C13—H8120.3C23—C24—H21119.9
C13—C12—C11119.10 (13)C26—C25—C24119.73 (13)
C13—C12—H9120.5C26—C25—H20120.1
C11—C12—H9120.5C24—C25—H20120.1
C10—C11—C12121.01 (13)C25—C26—C14119.18 (13)
C10—C11—H10119.5C25—C26—H19120.4
C12—C11—H10119.5C14—C26—H19120.4
C11—C10—C2121.25 (13)C26—C14—C15122.73 (13)
C11—C10—H11119.4C26—C14—N2117.53 (12)
C2—C10—H11119.4C15—C14—N2119.74 (12)
C4—C3—C2128.19 (12)C17—C16—C15125.68 (13)
C4—C3—H7115.9C17—C16—H18117.2
C2—C3—H7115.9C15—C16—H18117.2
C3—C4—C5125.32 (12)C16—C17—C20123.63 (12)
C3—C4—C7116.92 (12)C16—C17—C18119.06 (12)
C5—C4—C7117.57 (12)C20—C17—C18117.25 (12)
O6—C5—O3119.04 (12)O12—C18—O9120.03 (12)
O6—C5—C4125.42 (13)O12—C18—C17124.61 (13)
O3—C5—C4115.44 (11)O9—C18—C17115.32 (11)
O5—C7—O4119.64 (12)O11—C20—O10119.26 (12)
O5—C7—C4124.14 (12)O11—C20—C17125.36 (13)
O4—C7—C4116.15 (11)O10—C20—C17115.31 (11)
O4—C6—O3109.08 (10)O9—C19—O10109.68 (10)
O4—C6—C8105.46 (11)O9—C19—C22106.65 (11)
O3—C6—C8106.45 (11)O10—C19—C22105.78 (11)
O4—C6—C9110.69 (11)O9—C19—C21110.39 (11)
O3—C6—C9110.72 (11)O10—C19—C21110.60 (11)
C8—C6—C9114.17 (12)C22—C19—C21113.56 (12)
C6—C8—H1109.5C19—C21—H12109.5
C6—C8—H2109.5C19—C21—H13109.5
H1—C8—H2109.5H12—C21—H13109.5
C6—C8—H3109.5C19—C21—H14109.5
H1—C8—H3109.5H12—C21—H14109.5
H2—C8—H3109.5H13—C21—H14109.5
C6—C9—H4109.5C19—C22—H15109.5
C6—C9—H5109.5C19—C22—H16109.5
H4—C9—H5109.5H15—C22—H16109.5
C6—C9—H6109.5C19—C22—H17109.5
H4—C9—H6109.5H15—C22—H17109.5
H5—C9—H6109.5H16—C22—H17109.5
C10—C2—C1—C13−1.4 (2)C14—C15—C23—C24−0.5 (2)
C3—C2—C1—C13172.63 (13)C16—C15—C23—C24−177.84 (13)
C10—C2—C1—N1176.31 (11)C15—C23—C24—C25−0.1 (2)
C3—C2—C1—N1−9.7 (2)C23—C24—C25—C260.2 (2)
O2—N1—C1—C139.41 (18)C24—C25—C26—C140.4 (2)
O1—N1—C1—C13−169.89 (12)C25—C26—C14—C15−1.1 (2)
O2—N1—C1—C2−168.41 (12)C25—C26—C14—N2179.42 (12)
O1—N1—C1—C212.29 (18)C23—C15—C14—C261.2 (2)
C2—C1—C13—C12−0.1 (2)C16—C15—C14—C26178.33 (13)
N1—C1—C13—C12−177.85 (12)C23—C15—C14—N2−179.42 (12)
C1—C13—C12—C111.4 (2)C16—C15—C14—N2−2.2 (2)
C13—C12—C11—C10−1.2 (2)O8—N2—C14—C26−1.8 (2)
C12—C11—C10—C2−0.3 (2)O7—N2—C14—C26178.86 (13)
C1—C2—C10—C111.6 (2)O8—N2—C14—C15178.79 (15)
C3—C2—C10—C11−172.72 (13)O7—N2—C14—C15−0.60 (19)
C10—C2—C3—C4−56.1 (2)C23—C15—C16—C17−60.5 (2)
C1—C2—C3—C4130.06 (16)C14—C15—C16—C17122.41 (16)
C2—C3—C4—C5−9.8 (2)C15—C16—C17—C20−7.9 (2)
C2—C3—C4—C7175.41 (13)C15—C16—C17—C18174.98 (13)
C6—O3—C5—O6166.16 (13)C19—O9—C18—O12−166.58 (13)
C6—O3—C5—C4−17.28 (17)C19—O9—C18—C1715.59 (17)
C3—C4—C5—O6−16.9 (2)C16—C17—C18—O1222.6 (2)
C7—C4—C5—O6157.82 (14)C20—C17—C18—O12−154.70 (14)
C3—C4—C5—O3166.76 (13)C16—C17—C18—O9−159.71 (13)
C7—C4—C5—O3−18.49 (18)C20—C17—C18—O923.02 (18)
C6—O4—C7—O5−165.93 (13)C19—O10—C20—O11170.43 (12)
C6—O4—C7—C416.79 (17)C19—O10—C20—C17−12.53 (17)
C3—C4—C7—O516.9 (2)C16—C17—C20—O11−24.8 (2)
C5—C4—C7—O5−158.32 (14)C18—C17—C20—O11152.33 (14)
C3—C4—C7—O4−165.97 (12)C16—C17—C20—O10158.34 (13)
C5—C4—C7—O418.83 (18)C18—C17—C20—O10−24.51 (17)
C7—O4—C6—O3−50.14 (15)C18—O9—C19—O10−50.65 (15)
C7—O4—C6—C8−164.12 (12)C18—O9—C19—C22−164.75 (12)
C7—O4—C6—C971.93 (15)C18—O9—C19—C2171.46 (14)
C5—O3—C6—O450.57 (15)C20—O10—C19—O949.17 (15)
C5—O3—C6—C8163.91 (12)C20—O10—C19—C22163.83 (11)
C5—O3—C6—C9−71.47 (15)C20—O10—C19—C21−72.81 (14)
D—H···AD—HH···AD···AD—H···A
C3—H7···O50.932.432.7970 (16)104
C11—H10···O80.932.453.239 (2)143
C21—H13···O5i0.962.583.4188 (17)145
C16—H18···O120.932.542.8582 (18)100
C16—H18···O2ii0.932.553.4486 (18)163
C24—H21···O5iii0.932.483.3676 (19)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H7⋯O50.932.432.7970 (16)104
C11—H10⋯O80.932.453.239 (2)143
C21—H13⋯O5i 0.962.583.4188 (17)145
C16—H18⋯O120.932.542.8582 (18)100
C16—H18⋯O2ii 0.932.553.4486 (18)163
C24—H21⋯O5iii 0.932.483.3676 (19)160

Symmetry codes: (i) ; (ii) ; (iii) .

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