Literature DB >> 26330611

Thermodynamics and signatures of criticality in a network of neurons.

Gašper Tkačik1, Thierry Mora2, Olivier Marre3, Dario Amodei4, Stephanie E Palmer5, Michael J Berry6, William Bialek7.   

Abstract

The activity of a neural network is defined by patterns of spiking and silence from the individual neurons. Because spikes are (relatively) sparse, patterns of activity with increasing numbers of spikes are less probable, but, with more spikes, the number of possible patterns increases. This tradeoff between probability and numerosity is mathematically equivalent to the relationship between entropy and energy in statistical physics. We construct this relationship for populations of up to N = 160 neurons in a small patch of the vertebrate retina, using a combination of direct and model-based analyses of experiments on the response of this network to naturalistic movies. We see signs of a thermodynamic limit, where the entropy per neuron approaches a smooth function of the energy per neuron as N increases. The form of this function corresponds to the distribution of activity being poised near an unusual kind of critical point. We suggest further tests of criticality, and give a brief discussion of its functional significance.

Entities:  

Keywords:  Monte Carlo; correlation; entropy; information; neural networks

Mesh:

Year:  2015        PMID: 26330611      PMCID: PMC4577210          DOI: 10.1073/pnas.1514188112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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2.  Genomics-aided structure prediction.

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3.  Time ordering and the thermodynamics of strange sets: Theory and experimental tests.

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4.  Weak pairwise correlations imply strongly correlated network states in a neural population.

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5.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

6.  Sparse low-order interaction network underlies a highly correlated and learnable neural population code.

Authors:  Elad Ganmor; Ronen Segev; Elad Schneidman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-20       Impact factor: 11.205

7.  Finite-size scaling as a way to probe near-criticality in natural swarms.

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8.  Inverse spin glass and related maximum entropy problems.

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Review 9.  An introduction to critical points for biophysicists; observations of compositional heterogeneity in lipid membranes.

Authors:  Aurelia R Honerkamp-Smith; Sarah L Veatch; Sarah L Keller
Journal:  Biochim Biophys Acta       Date:  2008-10-01

10.  Critical dynamics in genetic regulatory networks: examples from four kingdoms.

Authors:  Enrique Balleza; Elena R Alvarez-Buylla; Alvaro Chaos; Stuart Kauffman; Ilya Shmulevich; Maximino Aldana
Journal:  PLoS One       Date:  2008-06-18       Impact factor: 3.240

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  49 in total

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2.  Coarse Graining, Fixed Points, and Scaling in a Large Population of Neurons.

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Journal:  Phys Rev Lett       Date:  2019-10-25       Impact factor: 9.161

Review 3.  Scale invariance in natural and artificial collective systems: a review.

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Journal:  Eur Phys J E Soft Matter       Date:  2018-01-31       Impact factor: 1.890

5.  Energetics of stochastic BCM type synaptic plasticity and storing of accurate information.

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Journal:  J Comput Neurosci       Date:  2021-02-02       Impact factor: 1.621

6.  Control of criticality and computation in spiking neuromorphic networks with plasticity.

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Journal:  Nat Commun       Date:  2020-06-05       Impact factor: 14.919

7.  A unifying framework for mean-field theories of asymmetric kinetic Ising systems.

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8.  PCA meets RG.

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Review 9.  Generalized CNS arousal: An elementary force within the vertebrate nervous system.

Authors:  D P Calderon; M Kilinc; A Maritan; J R Banavar; D Pfaff
Journal:  Neurosci Biobehav Rev       Date:  2016-05-20       Impact factor: 8.989

10.  Modelling the neural code in large populations of correlated neurons.

Authors:  Sacha Sokoloski; Amir Aschner; Ruben Coen-Cagli
Journal:  Elife       Date:  2021-10-05       Impact factor: 8.140

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